RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CCSMST1Q4G0I0 132 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 GCNT6Q5T4J0 391 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 FRMPD2BQ6IN97 320 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 TAGAPQ8N103 731 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 IGSF21Q96ID5 467 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 PIP5K1AQ99755 562 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 TMEM175Q9BSA9 504 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 MRPL9Q9BYD2 267 aaKnown RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 GIMAP4Q9NUV9 329 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 BTNL2Q9UIR0 455 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 EXO1Q9UQ84 846 aaKnown RBP21.4■■□□□ 1.02
TRIM28-202ENST00000341753 OR51B4Q9Y5P0 310 aa21.4■■□□□ 1.02
TRIM28-202ENST00000341753 ZAR1LA6NP61 321 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 CBLP22681 906 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 HNMTP50135 292 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 VEPH1Q14D04 833 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 SPHARQ15513 63 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 UAP1L1Q3KQV9 507 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 ABI3BPQ7Z7G0 1075 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 TMEM150AQ86TG1 271 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 LMNTD1Q8N9Z9 388 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 SPATA6Q9NWH7 488 aaPredicted RBP21.39■■□□□ 1.02
TRIM28-202ENST00000341753 CLEC4EQ9ULY5 219 aa21.39■■□□□ 1.02
TRIM28-202ENST00000341753 OR6C70A6NIJ9 312 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 TNFRSF21O75509 655 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 HBQ1P09105 142 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 OR56A5P0C7T3 313 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 MYL9P24844 172 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 GNG2P59768 71 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 SCN1BQ07699 218 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 TOR1AIP1Q5JTV8 583 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 OTOP2Q7RTS6 562 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 THOC6Q86W42 341 aaKnown RBP21.39■■□□□ 1.01
TRIM28-202ENST00000341753 HS6ST3Q8IZP7 471 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 CELF5Q8N6W0 485 aaKnown RBP21.39■■□□□ 1.01
TRIM28-202ENST00000341753 POLR2J2Q9GZM3 115 aaKnown RBP21.39■■□□□ 1.01
TRIM28-202ENST00000341753 ZNF334Q9HCZ1 680 aaPredicted RBP21.39■■□□□ 1.01
TRIM28-202ENST00000341753 CNOT2Q9NZN8 540 aaKnown RBP21.39■■□□□ 1.01
TRIM28-202ENST00000341753 SNX7Q9UNH6 387 aa21.39■■□□□ 1.01
TRIM28-202ENST00000341753 B4DXG7 233 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 NPIPB8E9PQR5 432 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 PRRG1O14668 218 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 TMCC2O75069 709 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 AP2A2O94973 939 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 YES1P07947 543 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 CSF3P09919 207 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 PSMA1P25786 263 aaKnown RBP21.38■■□□□ 1.01
TRIM28-202ENST00000341753 XCR1P46094 333 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 HNRNPA0Q13151 305 aaKnown RBP21.38■■□□□ 1.01
TRIM28-202ENST00000341753 NAE1Q13564 534 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 YIF1BQ5BJH7 314 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 IER5LQ5T953 404 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 ERAP2Q6P179 960 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 ZNF461Q8TAF7 563 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 SLC22A4Q9H015 551 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 MIXL1Q9H2W2 232 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 CORO2BQ9UQ03 480 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 LSM2Q9Y333 95 aaKnown RBP21.38■■□□□ 1.01
TRIM28-202ENST00000341753 TRBV4-1A0A0J9YWV2 114 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 HTR2BP41595 481 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 LARS2Q15031 903 aaKnown RBP21.38■■□□□ 1.01
TRIM28-202ENST00000341753 SYCE2Q6PIF2 218 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 TMIGD1Q6UXZ0 262 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 DNAJB7Q7Z6W7 309 aaPredicted RBP21.38■■□□□ 1.01
TRIM28-202ENST00000341753 OR9Q1Q8NGQ5 310 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 PXYLP1Q8TE99 480 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 DIRAS2Q96HU8 199 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 SPATA9Q9BWV2 254 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 TMPRSS11EQ9UL52 423 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 SNX11Q9Y5W9 270 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 CDH23Q9H251 3354 aa21.38■■□□□ 1.01
TRIM28-202ENST00000341753 A0A0G2JMP0 313 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 TRBC2A0A5B9 178 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 TLR4O00206 839 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 RFPL4BQ6ZWI9 263 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 ZNF282Q9UDV7 671 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-202ENST00000341753 YARS2Q9Y2Z4 477 aaKnown RBP21.37■■□□□ 1.01
TRIM28-202ENST00000341753 NINQ8N4C6 2090 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 A0A1W2PQL4 384 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-202ENST00000341753 NRG2O14511 850 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-202ENST00000341753 LHCGRP22888 699 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 PPIBP23284 216 aaKnown RBP21.37■■□□□ 1.01
TRIM28-202ENST00000341753 SOAT1P35610 550 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 CDK6Q00534 326 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 TEKQ02763 1124 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 TSTA3Q13630 321 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-202ENST00000341753 CDKL4Q5MAI5 379 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 C22orf42Q6IC83 251 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 ADAMTS19Q8TE59 1207 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 ALG14Q96F25 216 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 MAPKAP1Q9BPZ7 522 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 SLA2Q9H6Q3 261 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 MALT1Q9UDY8 824 aa21.37■■□□□ 1.01
TRIM28-202ENST00000341753 SH3D21A4FU49 640 aa21.36■■□□□ 1.01
TRIM28-202ENST00000341753 FABP12A6NFH5 140 aa21.36■■□□□ 1.01
TRIM28-202ENST00000341753 TMEM202A6NGA9 273 aa21.36■■□□□ 1.01
TRIM28-202ENST00000341753 ZNF670-ZNF695F2Z2N8 137 aa21.36■■□□□ 1.01
TRIM28-202ENST00000341753 CSTF2P33240 577 aaKnown RBP eCLIP21.36■■□□□ 1.01
TRIM28-202ENST00000341753 KIR2DL3P43628 341 aa21.36■■□□□ 1.01
TRIM28-202ENST00000341753 RPS13P62277 151 aaKnown RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms