RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 FAM60AQ9NP50 221 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 PDE7BQ9NP56 450 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 CMTM6Q9NX76 183 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 VAPAQ9P0L0 249 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 NME4O00746 187 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 KHNYNO15037 678 aaKnown RBP16.47■□□□□ 0.23
CLDN4-201ENST00000340958 SH3BP5O60239 455 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 ATP6V1G2O95670 118 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 B3GALT4O96024 378 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 ABCB1P08183 1280 aaPredicted RBP16.47■□□□□ 0.23
CLDN4-201ENST00000340958 DEFB134Q4QY38 66 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 MANEAQ5SRI9 462 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 NDUFAF5Q5TEU4 345 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 CLECL1Q8IZS7 167 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 MMP21Q8N119 569 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 ZCCHC7Q8N3Z6 543 aaKnown RBP16.47■□□□□ 0.23
CLDN4-201ENST00000340958 OR8J3Q8NGG0 315 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 OR4A15Q8NGL6 344 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 KCTD14Q9BQ13 255 aaPredicted RBP16.47■□□□□ 0.23
CLDN4-201ENST00000340958 ALG2Q9H553 416 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 SYNDIG1Q9H7V2 258 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 YY1AP1Q9H869 796 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 STARD5Q9NSY2 213 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 ABCD2Q9UBJ2 740 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 EPHA6Q9UF33 1036 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 MAN2B2Q9Y2E5 1009 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 PCDHB14Q9Y5E9 798 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 PCDHA9Q9Y5H5 950 aa16.47■□□□□ 0.23
CLDN4-201ENST00000340958 C4orf51C9J302 202 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 TXNDC9O14530 226 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 ZBTB11O95625 1053 aaPredicted RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 TRPC1P48995 793 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 ACTR3P61158 418 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 DAB2P98082 770 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 LIPEQ05469 1076 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 PDE7AQ13946 482 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 AASDHQ4L235 1098 aaPredicted RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 KANSL1Q7Z3B3 1105 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 CIDECQ96AQ7 238 aaPredicted RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 EXOSC8Q96B26 276 aaKnown RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 MIEF2Q96C03 454 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 ANKRD27Q96NW4 1050 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 PIF1Q9H611 641 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 SERHLQ9NQF3 203 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 LYARQ9NX58 379 aaKnown RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 TEX10Q9NXF1 929 aaPredicted RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 SUCOQ9UBS9 1254 aaKnown RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 BTNL2Q9UIR0 455 aa16.46■□□□□ 0.23
CLDN4-201ENST00000340958 EXO1Q9UQ84 846 aaKnown RBP16.46■□□□□ 0.23
CLDN4-201ENST00000340958 RNASET2O00584 256 aaKnown RBP16.45■□□□□ 0.22
CLDN4-201ENST00000340958 B4GAT1O43505 415 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 B3GALT2O43825 422 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 DRD2P14416 443 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 ENGP17813 658 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 CDKN2CP42773 168 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 SEPHS1P49903 392 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 WNT3P56703 355 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 RIPK1Q13546 671 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 TRIM25Q14258 630 aaKnown RBP16.45■□□□□ 0.22
CLDN4-201ENST00000340958 MUM1Q2TAK8 710 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 ASB9Q96DX5 294 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 LRGUKQ96M69 825 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 PAIP1Q9H074 479 aaKnown RBP16.45■□□□□ 0.22
CLDN4-201ENST00000340958 VPS4AQ9UN37 437 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 IGHV5-51A0A0C4DH38 117 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.45■□□□□ 0.22
CLDN4-201ENST00000340958 A0A1W2PRB8 838 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 EVPLLA8MZ36 301 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 FOXD2O60548 495 aaPredicted RBP16.45■□□□□ 0.22
CLDN4-201ENST00000340958 SRPX2O60687 465 aaPredicted RBP16.45■□□□□ 0.22
CLDN4-201ENST00000340958 PNLIPP16233 465 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 ALOX12P18054 663 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 SOX11P35716 441 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 SPATS1Q496A3 300 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 GTDC1Q4AE62 458 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 ZNF385BQ569K4 471 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 GUSBP11Q6P575 273 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 SPRED1Q7Z699 444 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 NATD1Q8N6N6 113 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 SLC26A7Q8TE54 656 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 SERINC2Q96SA4 455 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 PCDHAC1Q9H158 963 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 CD300AQ9UGN4 299 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 PLCL2Q9UPR0 1127 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 AP3M1Q9Y2T2 418 aa16.45■□□□□ 0.22
CLDN4-201ENST00000340958 MDC1Q14676 2089 aaKnown RBP16.44■□□□□ 0.22
CLDN4-201ENST00000340958 GLOD5A6NK44 160 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 A8MU76 341 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 H0Y3Z8 333 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 PDPK1O15530 556 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 C9P02748 559 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 EEFSECP57772 596 aaKnown RBP16.44■□□□□ 0.22
CLDN4-201ENST00000340958 COL9A2Q14055 689 aaPredicted RBP16.44■□□□□ 0.22
CLDN4-201ENST00000340958 NR1D2Q14995 579 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 SNCBQ16143 134 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 RUNDC3AQ59EK9 446 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 LRIF1Q5T3J3 769 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 ANGPTL8Q6UXH0 198 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 DNAJC22Q8N4W6 341 aa16.44■□□□□ 0.22
CLDN4-201ENST00000340958 TRIML2Q8N7C3 387 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms