RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 RGPD3A6NKT7 1758 aaPredicted RBP11.43□□□□□ -0.58
USP1-201ENST00000339950 RGPD4Q7Z3J3 1758 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 LCTP09848 1927 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 H0YC42 278 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CASKO14936 926 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ADAM23O75077 832 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 IFNA14P01570 189 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 IGLV3-27P01718 113 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 RPLP0P05388 317 aaKnown RBP11.43□□□□□ -0.58
USP1-201ENST00000339950 RHOP08100 348 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 HTR1AP08908 422 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 EPCAMP16422 314 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 PPP2R1BP30154 601 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 UGT2B15P54855 530 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 HYAL2Q12891 473 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 EIF4EBP2Q13542 120 aaPredicted RBP11.43□□□□□ -0.58
USP1-201ENST00000339950 NCF4Q15080 339 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CRB2Q5IJ48 1285 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CCBE1Q6UXH8 406 aaPredicted RBP11.43□□□□□ -0.58
USP1-201ENST00000339950 DGLUCYQ7Z3D6 616 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 DUS3LQ96G46 650 aaKnown RBP11.43□□□□□ -0.58
USP1-201ENST00000339950 CUEDC1Q9NWM3 386 aaPredicted RBP11.43□□□□□ -0.58
USP1-201ENST00000339950 DEC1Q9P2X7 70 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SH2B3Q9UQQ2 575 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CLCA3PQ9Y6N3 262 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 UGT2B17O75795 530 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SEC14L2O76054 403 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CD22P20273 847 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CCR2P41597 374 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SOX9P48436 509 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 DSTNP60981 165 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 KCNC4Q03721 635 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 GRIK2Q13002 908 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 KCNJ8Q15842 424 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 DUSP7Q16829 419 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 IQCCQ4KMZ1 466 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ZNF385BQ569K4 471 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TRIQKQ629K1 86 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 C8orf82Q6P1X6 216 aaPredicted RBP11.43□□□□□ -0.58
USP1-201ENST00000339950 MTFR2Q6P444 385 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 BRAT1Q6PJG6 821 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ASB18Q6ZVZ8 466 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 KRT74Q7RTS7 529 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TUBA1CQ9BQE3 449 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SPNS1Q9H2V7 528 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 MAT2BQ9NZL9 334 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CLEC2DQ9UHP7 191 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 PCDHGA3Q9Y5H0 932 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 PRAMEF33A0A0G2JMD5 474 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 A0A1W2PQ72 361 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ZSCAN5BA6NJL1 495 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SLC22A1O15245 554 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ZW10O43264 779 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 PRAMEF10O60809 474 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 NOS3P29474 1203 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TAS2R41P59536 307 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TUBA3CQ13748 450 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 PRAMEF14Q5SWL7 426 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 PRAMEF13Q5VWM6 474 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 C22orf42Q6IC83 251 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 POMZP3Q6PJE2 187 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TMEFF1Q8IYR6 380 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 CELF2-AS1Q8N7Q2 184 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TRIM63Q969Q1 353 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 DOHHQ9BU89 302 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 SLC29A3Q9BZD2 475 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 TMED5Q9Y3A6 229 aa11.43□□□□□ -0.58
USP1-201ENST00000339950 ERI3O43414 337 aaKnown RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 ZNF24P17028 368 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ATF4P18848 351 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 TIA1P31483 386 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP1-201ENST00000339950 IFNA8P32881 189 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 SLC6A11P48066 632 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 PFN3P60673 137 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ABATP80404 500 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 SFTPA1Q8IWL2 248 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 C10orf53Q8N6V4 93 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 B3GNT7Q8NFL0 401 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 OR2A12Q8NGT7 310 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 OR14C36Q8NHC7 312 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 SMG7Q92540 1137 aaKnown RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 MMP28Q9H239 520 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 GORASP2Q9H8Y8 452 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ADAP2Q9NPF8 381 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 IL36AQ9UHA7 158 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 GTF2A1LQ9UNN4 478 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3DA0A087WVF3 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3IA0A087WXS9 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3EA0A087X179 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3KA0A087X1G2 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3FA6NER0 549 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 CCDC182A6NF36 153 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3LB9A6J9 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 PRR23D1E9PI22 279 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 NRG2O14511 850 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 ANKRD28O15084 1053 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3HP0C7X1 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 PRR23D2P0DMB1 279 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 C7P10643 843 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ASMTP46597 345 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms