RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TMEM121BQ9BXQ6 578 aaPredicted RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 SLC26A1Q9H2B4 701 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 MKKSQ9NPJ1 570 aaPredicted RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 DKK4Q9UBT3 224 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 CROTQ9UKG9 612 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 DLGAP4Q9Y2H0 992 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 ATG4BQ9Y4P1 393 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 AHCTF1Q8WYP5 2266 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 SDK2Q58EX2 2172 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 LAMA5O15230 3695 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 IGLV3-12A0A075B6K2 115 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 CNOT3O75175 753 aaKnown RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 MYO1DO94832 1006 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 BMP10O95393 424 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 RNH1P13489 461 aaKnown RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 IDH3AP50213 366 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 HNRNPH2P55795 449 aaKnown RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 PCBP4P57723 403 aaKnown RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 ERV3-1Q14264 604 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 NCF4Q15080 339 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 STT3BQ8TCJ2 826 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 TBC1D20Q96BZ9 403 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 OR52B2Q96RD2 323 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 SIKE1Q9BRV8 207 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 TGIF2Q9GZN2 237 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 CCDC86Q9H6F5 360 aaKnown RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 KCNK13Q9HB14 408 aa20.93■□□□□ 0.94
SDC3-202ENST00000339394 LYARQ9NX58 379 aaKnown RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 GPN3Q9UHW5 284 aaPredicted RBP20.93■□□□□ 0.94
SDC3-202ENST00000339394 LOC101059948A0A1B0GTJ6 334 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 GMNCA6NCL1 334 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 FAM227AF5H4B4 570 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 CYR61O00622 381 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 PROM1O43490 865 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 JRKO75564 520 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 TROVE2P10155 538 aaKnown RBP eCLIP20.92■□□□□ 0.94
SDC3-202ENST00000339394 RAB38P57729 211 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 FOXL2P58012 376 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 OCA2Q04671 838 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 EMX2Q04743 252 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 NKG7Q16617 165 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 SMU1Q2TAY7 513 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 NXNQ6DKJ4 435 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 ACTRT2Q8TDY3 377 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 TM4SF18Q96CE8 201 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 OR1F2PQ96R84 312 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 C1orf50Q9BV19 199 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 RBCK1Q9BYM8 510 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 MS4A12Q9NXJ0 267 aa20.92■□□□□ 0.94
SDC3-202ENST00000339394 A0A0G2JND7 137 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 VSTM2BA6NLU5 285 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 PSMD12O00232 456 aaPredicted RBP20.91■□□□□ 0.94
SDC3-202ENST00000339394 TLX3O43711 291 aaPredicted RBP20.91■□□□□ 0.94
SDC3-202ENST00000339394 ZGLP1P0C6A0 271 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 LBPP18428 481 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 IL10P22301 178 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 F8A1P23610 371 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 TACR1P25103 407 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 DLSTP36957 453 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 TRA2BP62995 288 aaKnown RBP20.91■□□□□ 0.94
SDC3-202ENST00000339394 ERVK-8P63133 956 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 SF3A3Q12874 501 aaKnown RBP eCLIP20.91■□□□□ 0.94
SDC3-202ENST00000339394 LSM12Q3MHD2 195 aaKnown RBP20.91■□□□□ 0.94
SDC3-202ENST00000339394 TUBB8Q3ZCM7 444 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 RIPOR1Q6ZS17 1223 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 ZC3H7AQ8IWR0 971 aaKnown RBP20.91■□□□□ 0.94
SDC3-202ENST00000339394 EFCAB3Q8N7B9 438 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 ENDOVQ8N8Q3 282 aaKnown RBP20.91■□□□□ 0.94
SDC3-202ENST00000339394 CEP70Q8NHQ1 597 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 CSF3RQ99062 836 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 WDR54Q9H977 334 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 TEX10Q9NXF1 929 aaPredicted RBP20.91■□□□□ 0.94
SDC3-202ENST00000339394 PHF11Q9UIL8 331 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 SPACA6W5XKT8 324 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 SCN3AQ9NY46 2000 aa20.91■□□□□ 0.94
SDC3-202ENST00000339394 A0A1W2PR48 441 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 C21orf140B9A014 251 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 TERTO14746 1132 aaKnown RBP20.9■□□□□ 0.94
SDC3-202ENST00000339394 CDC123O75794 336 aaPredicted RBP20.9■□□□□ 0.94
SDC3-202ENST00000339394 KLF7O75840 302 aaPredicted RBP20.9■□□□□ 0.94
SDC3-202ENST00000339394 CAPNS1P04632 268 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 FHP07954 510 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 RAB40ALP0C0E4 278 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 BCKDHAP12694 445 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 SDC1P18827 310 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 CPN2P22792 545 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 TAS2R50P59544 299 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 ZNF763Q0D2J5 394 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 MAD2L1Q13257 205 aaPredicted RBP20.9■□□□□ 0.94
SDC3-202ENST00000339394 IL23RQ5VWK5 629 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 OGFOD2Q6N063 350 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 SHISA6Q6ZSJ9 500 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 ACAD11Q709F0 780 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 LAPTM4BQ86VI4 370 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 FAM47BQ8NA70 645 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 C16orf78Q8WTQ4 265 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 MIEF2Q96C03 454 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 NAF1Q96HR8 494 aaKnown RBP20.9■□□□□ 0.94
SDC3-202ENST00000339394 SPSB2Q99619 263 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 TCF7L2Q9NQB0 619 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms