RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CADM2Q8N3J6 435 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 TSEN15Q8WW01 171 aaKnown RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 SNX18Q96RF0 628 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 ACTR6Q9GZN1 396 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 GPRC5BQ9NZH0 403 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 A8MU76 341 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 GTPBP1O00178 669 aaKnown RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 SCAMP2O15127 329 aaKnown RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 SEPT4O43236 478 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 ZNF3P17036 446 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 PPM1AP35813 382 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 SELENOWP63302 87 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 DHRS4L2Q6PKH6 230 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 CADM3Q8N126 398 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 PPIL3Q9H2H8 161 aaKnown RBP18.56■□□□□ 0.56
USP48-201ENST00000308271 MAU2Q9Y6X3 613 aa18.56■□□□□ 0.56
USP48-201ENST00000308271 BCORQ6W2J9 1755 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 LOC285095A0A1B0GVY8 99 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 MTMR11A4FU01 709 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 AGR2O95994 175 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 ACVR2AP27037 513 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 SNRPD2P62316 118 aaKnown RBP18.55■□□□□ 0.56
USP48-201ENST00000308271 ZNF33BQ06732 778 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 GTF2IRD2BQ6EKJ0 949 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 RPTNQ6XPR3 784 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 GTF2IRD2Q86UP8 949 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 OR52N2Q8NGI0 321 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 COMMD4Q9H0A8 199 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 OR51I1Q9H343 314 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 ZFR2Q9UPR6 939 aaKnown RBP18.55■□□□□ 0.56
USP48-201ENST00000308271 USP22Q9UPT9 525 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 N6AMT1Q9Y5N5 214 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 FXYD6-FXYD2A0A087WZ82 144 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 NFKBIEO00221 500 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 SLC16A6O15403 523 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 LYRM1O43325 122 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 LAMP1P11279 417 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 IDSP22304 550 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 BCL7AQ4VC05 210 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 OR5P2Q8WZ92 322 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 HAVCR1Q96D42 359 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 MNTQ99583 582 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 FXYD6Q9H0Q3 95 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 MMP28Q9H239 520 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 CNOT2Q9NZN8 540 aaKnown RBP18.55■□□□□ 0.56
USP48-201ENST00000308271 PCDHGA4Q9Y5G9 962 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 FZD9O00144 591 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 ETFAP13804 333 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 NT5EP21589 574 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 CFL1P23528 166 aaKnown RBP18.55■□□□□ 0.56
USP48-201ENST00000308271 CMPK1P30085 196 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 POLR2IP36954 125 aaKnown RBP18.55■□□□□ 0.56
USP48-201ENST00000308271 CLK3P49761 638 aaKnown RBP18.55■□□□□ 0.56
USP48-201ENST00000308271 STEAP3Q658P3 488 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 RHBDF1Q96CC6 855 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 TXNDC15Q96J42 360 aa18.55■□□□□ 0.56
USP48-201ENST00000308271 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.55■□□□□ 0.56
USP48-201ENST00000308271 J3QLW9 94 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 OSMP13725 252 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 ZNF19P17023 458 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 SMN1Q16637 294 aaKnown RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 CDKL4Q5MAI5 379 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 SLCO4A1Q96BD0 722 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 EIF3FO00303 357 aaPredicted RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 UBFD1O14562 309 aaKnown RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 EEF1E1O43324 174 aaKnown RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 TNFSF8P32971 234 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 DOC2AQ14183 400 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 HSF5Q4G112 596 aaPredicted RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 HSD17B12Q53GQ0 312 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 SYT6Q5T7P8 510 aaPredicted RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 FAM171BQ6P995 826 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 SCRN2Q96FV2 425 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 ZNF300Q96RE9 604 aaPredicted RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 SLC2A11Q9BYW1 496 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 NPAP1Q9NZP6 1156 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 MRPS33Q9Y291 106 aaKnown RBP18.54■□□□□ 0.56
USP48-201ENST00000308271 A0A0G2JN53 185 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 A0A0G2JPF8 293 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 HNRNPCL3B7ZW38 293 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 PCDH17O14917 1159 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 SLC25A12O75746 678 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 OR7A10O76100 309 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 HNRNPCL4P0DMR1 293 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 ACADMP11310 421 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 VIPR1P32241 457 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 ZNF234Q14588 700 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 TAF13Q15543 124 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 NTRK2Q16620 822 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 C4orf46Q504U0 113 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 AMZ2Q86W34 360 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 TMEM151AQ8N4L1 468 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 APIPQ96GX9 242 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 CLMPQ9H6B4 373 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 KANTRA0A1W2PQU2 76 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 APOL3O95236 402 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 ARRB2P32121 409 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 HNF1BP35680 557 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 SMCO1Q147U7 214 aa18.54■□□□□ 0.56
USP48-201ENST00000308271 RGNQ15493 299 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms