RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SNRNP200O75643 2136 aaKnown RBP19.14■□□□□ 0.65
VPS53-201ENST00000291074 A0A0G2JN53 185 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 PRR23AA6NEV1 266 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 E9PQ18 207 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 RGS10O43665 173 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 ARAFP10398 606 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 PSMB9P28065 219 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 RPS26P11Q5JNZ5 115 aaPredicted RBP19.14■□□□□ 0.65
VPS53-201ENST00000291074 DEPDC1Q5TB30 811 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 IKBIPQ70UQ0 350 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 LGI4Q8N135 537 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 KIAA1958Q8N8K9 716 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 LZICQ8WZA0 190 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 RAB7BQ96AH8 199 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 HRASLS5Q96KN8 279 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 PLA2G2FQ9BZM2 168 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 CORINQ9Y5Q5 1042 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 SNX11Q9Y5W9 270 aa19.14■□□□□ 0.65
VPS53-201ENST00000291074 A0A1W2PPV9 198 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 SH3PXD2BA1X283 911 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 EN2P19622 333 aaPredicted RBP19.13■□□□□ 0.65
VPS53-201ENST00000291074 BSGP35613 385 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 RUNX3Q13761 415 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 GANABQ14697 944 aaKnown RBP19.13■□□□□ 0.65
VPS53-201ENST00000291074 ZNF829Q3KNS6 432 aaPredicted RBP19.13■□□□□ 0.65
VPS53-201ENST00000291074 TNFAIP8L2Q6P589 184 aaPredicted RBP19.13■□□□□ 0.65
VPS53-201ENST00000291074 CROCCP3Q8IVE0 287 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 LINC01555Q8NAE3 123 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 UCN3Q969E3 161 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 ABTB1Q969K4 478 aaPredicted RBP19.13■□□□□ 0.65
VPS53-201ENST00000291074 TM4SF18Q96CE8 201 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 AIF1LQ9BQI0 150 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 OSGEPL1Q9H4B0 414 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 EPS8L2Q9H6S3 715 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 TSC22D4Q9Y3Q8 395 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 AP1M2Q9Y6Q5 423 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 CLPXO76031 633 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 STATHP02808 62 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 FUCA1P04066 466 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 ACP5P13686 325 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 DSTNP60981 165 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 ZNF630Q2M218 657 aaPredicted RBP19.13■□□□□ 0.65
VPS53-201ENST00000291074 PROX2Q3B8N5 592 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 CCDC80Q76M96 950 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 SLC44A2Q8IWA5 706 aaPredicted RBP19.13■□□□□ 0.65
VPS53-201ENST00000291074 SLC15A4Q8N697 577 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 AMBNQ9NP70 447 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 LHX9Q9NQ69 397 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 RHCGQ9UBD6 479 aa19.13■□□□□ 0.65
VPS53-201ENST00000291074 PPM1DO15297 605 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 SLC35G4P0C7Q5 338 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 POU2F1P14859 743 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 DDCP20711 480 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 ACVR2AP27037 513 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 PCBP3P57721 371 aaKnown RBP19.12■□□□□ 0.65
VPS53-201ENST00000291074 CLCA4Q14CN2 919 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 MOGQ16653 247 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 FAM20CQ8IXL6 584 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 AMER3Q8N944 861 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 BORCS5Q969J3 196 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 RHBGQ9H310 441 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 XKR8Q9H6D3 395 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 SFXN1Q9H9B4 322 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 ACOT13Q9NPJ3 140 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 STON1Q9Y6Q2 735 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 M0R129 80 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 PCDH17O14917 1159 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 KRT75O95678 551 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 RECKO95980 971 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 PAK4O96013 591 aaPredicted RBP19.12■□□□□ 0.65
VPS53-201ENST00000291074 LCKP06239 509 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 HSPB3Q12988 150 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 CST6Q15828 149 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 CRB2Q5IJ48 1285 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 CEACAM20Q6UY09 585 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 HORMAD2Q8N7B1 307 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 NDNFQ8TB73 568 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 MIPOL1Q8TD10 442 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 NLNQ9BYT8 704 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 AHSPQ9NZD4 102 aa19.12■□□□□ 0.65
VPS53-201ENST00000291074 A0A1W2PP55 124 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 SCAMP1O15126 338 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 TMPRSS11DO60235 418 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 GABARAPO95166 117 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 UQCRC2P22695 453 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 CCR8P51685 355 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 C21orf59P57076 290 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 FGL2Q14314 439 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 IRF4Q15306 451 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 DUSP7Q16829 419 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 FAM46CQ5VWP2 391 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 ABHD11Q8NFV4 315 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 EXOSC8Q96B26 276 aaKnown RBP19.11■□□□□ 0.65
VPS53-201ENST00000291074 ZNF347Q96SE7 839 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 PELI2Q9HAT8 420 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 WASH6PQ9NQA3 447 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 THSD1Q9NS62 852 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 TEX10Q9NXF1 929 aaPredicted RBP19.11■□□□□ 0.65
VPS53-201ENST00000291074 ANGPT4Q9Y264 503 aa19.11■□□□□ 0.65
VPS53-201ENST00000291074 TRBC2A0A5B9 178 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms