RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TACC2O95359 2948 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 TRBV11-1A0A0K0K1C0 115 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 ERI3O43414 337 aaKnown RBP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 MAN1A2O60476 641 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 STK16O75716 305 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 ZFAND5O76080 213 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 MYO1DO94832 1006 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 S100BP04271 92 aaPredicted RBP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 GSTA2P09210 222 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 STMN1P16949 149 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 SERPINB1P30740 379 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 SSTR2P30874 369 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 KCNC1P48547 511 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 SSR4P51571 173 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 MTTPP55157 894 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 SLC13A2Q13183 592 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 SLBPQ14493 270 aaKnown RBP eCLIP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 ELAVL1Q15717 326 aaKnown RBP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 ADPRMQ3LIE5 342 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 TMEM211Q6ICI0 200 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 RGS9BPQ6ZS82 235 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 GPSM1Q86YR5 675 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 ZBED8Q8IZ13 594 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 KIF2BQ8N4N8 673 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 APCDD1LQ8NCL9 501 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 CCT6BQ92526 530 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 MTFMTQ96DP5 389 aaKnown RBP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 MS4A6EQ96DS6 147 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 PTCD3Q96EY7 689 aaKnown RBP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 KCNC2Q96PR1 638 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 CPNE1Q99829 537 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 WDR83Q9BRX9 315 aaKnown RBP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 PHACTR1Q9C0D0 580 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 REXO4Q9GZR2 422 aaKnown RBP11.13□□□□□ -0.63
UPF3B-204ENST00000619445 KLHL31Q9H511 634 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 NECTIN3Q9NQS3 549 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 FBXW2Q9UKT8 454 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 DNAJC13O75165 2243 aa11.13□□□□□ -0.63
UPF3B-204ENST00000619445 ANKRD17O75179 2603 aaKnown RBP11.12□□□□□ -0.63
UPF3B-204ENST00000619445 TEP1Q99973 2627 aaKnown RBP11.12□□□□□ -0.63
UPF3B-204ENST00000619445 CCDC189A1A4V9 331 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 FAM187AA6NFU0 413 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 ITGA10O75578 1167 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 B3GALT4O96024 378 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 TUBB4AP04350 444 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 ADORA2A-AS1P86434 159 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 BIKQ13323 160 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 SERTAD2Q14140 314 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 TBCCQ15814 346 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 PDK4Q16654 411 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 ARHGAP11AQ6P4F7 1023 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 CCDC91Q7Z6B0 441 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 SHISA5Q8N114 240 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 CPSF7Q8N684 471 aaKnown RBP11.12□□□□□ -0.63
UPF3B-204ENST00000619445 ZFP62Q8NB50 900 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-204ENST00000619445 OR14A16Q8NHC5 309 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 C16orf52Q8NHV5 167 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 AGAP11Q8TF27 550 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 WDR34Q96EX3 536 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 PDLIM2Q96JY6 352 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 KRT12Q99456 494 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 MCMBPQ9BTE3 642 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 TRIM31Q9BZY9 425 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 TSPAN10Q9H1Z9 355 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-204ENST00000619445 GRPEL1Q9HAV7 217 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 LYRM4Q9HD34 91 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 PNO1Q9NRX1 252 aaKnown RBP11.12□□□□□ -0.63
UPF3B-204ENST00000619445 WHRNQ9P202 907 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 IKZF3Q9UKT9 509 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 CLCA3PQ9Y6N3 262 aa11.12□□□□□ -0.63
UPF3B-204ENST00000619445 USP27XA6NNY8 438 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 A8MVJ9 347 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 ACOT7O00154 380 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 DYRK3O43781 588 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 PEX1O43933 1283 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 CTNSO60931 367 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 DNAJB6O75190 326 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 CCDC166P0CW27 439 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 PRF1P14222 555 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 CAPN3P20807 821 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 GRNP28799 593 aaKnown RBP11.11□□□□□ -0.63
UPF3B-204ENST00000619445 SPRP35270 261 aaPredicted RBP11.11□□□□□ -0.63
UPF3B-204ENST00000619445 PTGS2P35354 604 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 GP5P40197 560 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 MEOX1P50221 254 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 PGGT1BP53609 377 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 CAV1Q03135 178 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 STX4Q12846 297 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 ZNF460Q14592 562 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 TMEM35AQ53FP2 167 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 XKR6Q5GH73 641 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 ZNF468Q5VIY5 522 aaPredicted RBP11.11□□□□□ -0.63
UPF3B-204ENST00000619445 ABHD17CQ6PCB6 329 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 LRRC70Q7Z2Q7 622 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 DOLPP1Q86YN1 238 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 CEP97Q8IW35 865 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 SNX31Q8N9S9 440 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 PDPRQ8NCN5 879 aa11.11□□□□□ -0.63
UPF3B-204ENST00000619445 MORN4Q8NDC4 146 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms