RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DDX31Q9H8H2 851 aaKnown RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 COPS7BQ9H9Q2 264 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 HCN3Q9P1Z3 774 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 IFT80Q9P2H3 777 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-211ENST00000618700 MAP4K5Q9Y4K4 846 aa18.65■□□□□ 0.58
UPF3A-211ENST00000618700 SCN3AQ9NY46 2000 aa18.64■□□□□ 0.58
UPF3A-211ENST00000618700 A0A0A6YYD5 115 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 LOC101059948A0A1B0GTJ6 334 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 C21orf140B9A014 251 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 CNOT3O75175 753 aaKnown RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 DNAJB6O75190 326 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 EEDO75530 441 aaKnown RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 ALBP02768 609 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 RAB40ALP0C0E4 278 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 MDH1P40925 334 aaKnown RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 PRSS12P56730 875 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 BTKQ06187 659 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 NCF4Q15080 339 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 PDCD2Q16342 344 aaPredicted RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 SYT16Q17RD7 645 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 AP5B1Q2VPB7 878 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 MRPL14Q6P1L8 145 aaKnown RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 CRLF3Q8IUI8 442 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 DDIASQ8IXT1 998 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 SHISA5Q8N114 240 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 ZCCHC7Q8N3Z6 543 aaKnown RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 C1orf52Q8N6N3 182 aaKnown RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 ACOT4Q8N9L9 421 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 ZNF248Q8NDW4 579 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 COL26A1Q96A83 441 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 C3orf30Q96M34 536 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 FAM117AQ9C073 453 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 SIRT5Q9NXA8 310 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 AHSPQ9NZD4 102 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 CTSFQ9UBX1 484 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 MARCOQ9UEW3 520 aaPredicted RBP18.64■□□□□ 0.57
UPF3A-211ENST00000618700 ADAM29Q9UKF5 820 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 CROTQ9UKG9 612 aa18.64■□□□□ 0.57
UPF3A-211ENST00000618700 ACACBO00763 2458 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 TMEM8BA6NDV4 472 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 C9J4A7 227 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 LSM1O15116 133 aaKnown RBP18.63■□□□□ 0.57
UPF3A-211ENST00000618700 RGS14O43566 566 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 B3GALT2O43825 422 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 HK2P52789 917 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 OLR1P78380 273 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 DNASE1L3Q13609 305 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 RUNX2Q13950 521 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 SPIN4Q56A73 249 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 MRM1Q6IN84 353 aaKnown RBP18.63■□□□□ 0.57
UPF3A-211ENST00000618700 GALNT18Q6P9A2 607 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 NUDT13Q86X67 352 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 ZC3H7AQ8IWR0 971 aaKnown RBP18.63■□□□□ 0.57
UPF3A-211ENST00000618700 CA13Q8N1Q1 262 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 IL22RA1Q8N6P7 574 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 PIWIL2Q8TC59 973 aaKnown RBP18.63■□□□□ 0.57
UPF3A-211ENST00000618700 APIPQ96GX9 242 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 METTL2AQ96IZ6 378 aaKnown RBP18.63■□□□□ 0.57
UPF3A-211ENST00000618700 TGIF2Q9GZN2 237 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 WDR54Q9H977 334 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 MKKSQ9NPJ1 570 aaPredicted RBP18.63■□□□□ 0.57
UPF3A-211ENST00000618700 TRPC4Q9UBN4 977 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 ACACAQ13085 2346 aa18.63■□□□□ 0.57
UPF3A-211ENST00000618700 VSTM2BA6NLU5 285 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 TCP11X1B4DZS4 312 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 SLCO1B7G3V0H7 640 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 HDAC3O15379 428 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 CHST10O43529 356 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 TMPRSS11DO60235 418 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 TCN2P20062 427 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 F8A1P23610 371 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 TPP2P29144 1249 aaPredicted RBP18.62■□□□□ 0.57
UPF3A-211ENST00000618700 RAE1P78406 368 aaKnown RBP18.62■□□□□ 0.57
UPF3A-211ENST00000618700 NR6A1Q15406 480 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 FAM47EQ6ZV65 393 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 PAGE2Q7Z2X7 111 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 OR51Q1Q8NH59 317 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 KCNE4Q8WWG9 221 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 RNF166Q96A37 237 aaPredicted RBP18.62■□□□□ 0.57
UPF3A-211ENST00000618700 MEAF6Q9HAF1 191 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 LYRM4Q9HD34 91 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 C14orf105Q9NVL8 296 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 KCMF1Q9P0J7 381 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 ZNF282Q9UDV7 671 aaPredicted RBP18.62■□□□□ 0.57
UPF3A-211ENST00000618700 VTI1BQ9UEU0 232 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 DAPP1Q9UN19 280 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 PCDHGA6Q9Y5G7 932 aa18.62■□□□□ 0.57
UPF3A-211ENST00000618700 EDF1O60869 148 aaKnown RBP18.61■□□□□ 0.57
UPF3A-211ENST00000618700 KITP10721 976 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 RNH1P13489 461 aaKnown RBP18.61■□□□□ 0.57
UPF3A-211ENST00000618700 DLSTP36957 453 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 LIM2P55344 173 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 ACSM2AQ08AH3 577 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 KIAA0040Q15053 153 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 NKG7Q16617 165 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 SPDYAQ5MJ70 313 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 MLIPQ5VWP3 458 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 ACSM2BQ68CK6 577 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 MED25Q71SY5 747 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 MAVSQ7Z434 540 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms