RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PRAMEF33A0A0G2JMD5 474 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.58■□□□□ 0.4
UPF1-210ENST00000600689 SLC38A8A6NNN8 435 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 MRPS14O60783 128 aaKnown RBP17.58■□□□□ 0.4
UPF1-210ENST00000600689 PRAMEF10O60809 474 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 CLDN11O75508 207 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 GADD45GO95257 159 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 ITGA2P17301 1181 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 CHMP24386 653 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 AOAHP28039 575 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 IFI44LQ53G44 452 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 DNAJB8Q8NHS0 232 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 CIDECQ96AQ7 238 aaPredicted RBP17.58■□□□□ 0.4
UPF1-210ENST00000600689 CEP295NLQ96MC4 621 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 HMX1Q9NP08 348 aaPredicted RBP17.58■□□□□ 0.4
UPF1-210ENST00000600689 VPS29Q9UBQ0 182 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 SNX7Q9UNH6 387 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 KLK4Q9Y5K2 254 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 A0A1W2PQ72 361 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 CD22P20273 847 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 PSMA1P25786 263 aaKnown RBP17.58■□□□□ 0.4
UPF1-210ENST00000600689 IFNA8P32881 189 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 IL12RB1P42701 662 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 RPS26P62854 115 aaKnown RBP17.58■□□□□ 0.4
UPF1-210ENST00000600689 SRSF11Q05519 484 aaKnown RBP17.58■□□□□ 0.4
UPF1-210ENST00000600689 CAPNS2Q96L46 248 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 CREBZFQ9NS37 354 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 PLCXD1Q9NUJ7 323 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 LHX3Q9UBR4 397 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 CARD8Q9Y2G2 431 aa17.58■□□□□ 0.4
UPF1-210ENST00000600689 E7EQ34 232 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 TNFRSF21O75509 655 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 SCO1O75880 301 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 C6orf47O95873 294 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 ANXA8P13928 327 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 P2RX3P56373 397 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 HYAL2Q12891 473 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 BTBD16Q32M84 506 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 FBXO22Q8NEZ5 403 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 FRMD6Q96NE9 622 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 SRRQ9GZT4 340 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 CTPS2Q9NRF8 586 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 ASIC5Q9NY37 505 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 MAT2BQ9NZL9 334 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 C2orf78A6NCI8 922 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 H7C0S8 307 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 COCHO43405 550 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 GABRB1P18505 474 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 TNNI3P19429 210 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 OR1D2P34982 312 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 ATP13A5Q4VNC0 1218 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 PLAG1Q6DJT9 500 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 FLCNQ8NFG4 579 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 TBC1D20Q96BZ9 403 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 CRELD1Q96HD1 420 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 SLC22A4Q9H015 551 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 GRIP1Q9Y3R0 1128 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 CMAHPQ9Y471 501 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 HSPB11Q9Y547 144 aa17.57■□□□□ 0.4
UPF1-210ENST00000600689 MN1Q10571 1320 aaPredicted RBP17.57■□□□□ 0.4
UPF1-210ENST00000600689 B4DXG7 233 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 PQBP1O60828 265 aaKnown RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 CSO75390 466 aaKnown RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 APEX1P27695 318 aaKnown RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 GPC1P35052 558 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 CSKP41240 450 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 KIR2DL3P43628 341 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 SCARB2Q14108 478 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 SPHARQ15513 63 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 CXorf57Q6NSI4 855 aaKnown RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 DENND6BQ8NEG7 585 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 CSGALNACT1Q8TDX6 532 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 UCK2Q9BZX2 261 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 DNAJC11Q9NVH1 559 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 PCDHGB2Q9Y5G2 931 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 GBF1Q92538 1859 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 SH3BP5O60239 455 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 CSF3P09919 207 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 ZDHHC11BP0C7U3 371 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 CD9P21926 228 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 UQCRC1P31930 480 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 HBA1P69905 142 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 ALDH6A1Q02252 535 aaKnown RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 CHRNEQ04844 493 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 BCL2L1Q07817 233 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 QPRTQ15274 297 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 RPS26P11Q5JNZ5 115 aaPredicted RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 RNF130Q86XS8 419 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 NPAS3Q8IXF0 933 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 NXPE1Q8N323 547 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 TCEANCQ8N8B7 351 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 HJURPQ8NCD3 748 aaPredicted RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 ATP6V1C2Q8NEY4 427 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 ZNF717Q9BY31 904 aaPredicted RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 FKBP14Q9NWM8 211 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 NLKQ9UBE8 527 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 CCDC88CQ9P219 2028 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 OR2AG2A6NM03 316 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 HOXD10P28358 340 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 CHI3L1P36222 383 aaPredicted RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms