RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.67□□□□□ -1.5
VRK3-220ENST00000600259 C2CD4AQ8NCU7 369 aaPredicted RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 MCUQ8NE86 351 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 NCLNQ969V3 563 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 ALKBH8Q96BT7 664 aaKnown RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 FBXL8Q96CD0 374 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 MBD6Q96DN6 1003 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 PDLIM2Q96JY6 352 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 SERPINB12Q96P63 405 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 QRFPRQ96P65 431 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 NDNQ99608 321 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 TTTY12Q9BZ98 90 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 PLAC1Q9HBJ0 212 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 SLC24A3Q9HC58 644 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 TIMMDC1Q9NPL8 285 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 SEMA4BQ9NPR2 832 aaPredicted RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 MYOTQ9UBF9 498 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 FBXW2Q9UKT8 454 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 ZKSCAN5Q9Y2L8 839 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 MMACHCQ9Y4U1 282 aa5.67□□□□□ -1.5
VRK3-220ENST00000600259 PHF3Q92576 2039 aaKnown RBP5.67□□□□□ -1.5
VRK3-220ENST00000600259 FAM166BA8MTA8 275 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 CYR61O00622 381 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 AQP7O14520 342 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SUSD5O60279 629 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PRAMEF4O60810 478 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 OR2J2O76002 312 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 ZWINTO95229 277 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 FGGP02679 453 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 TUBB4AP04350 444 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SERPIND1P05546 499 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PTMSP20962 102 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 ENDOUP21128 410 aaKnown RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 HOXC12P31275 282 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SOX3P41225 446 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 HNF4AP41235 474 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SSR4P51571 173 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 HK2P52789 917 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 TERF1P54274 439 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 AP1S2P56377 157 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 HSD17B7P56937 341 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SARNPP82979 210 aaKnown RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 RGS1Q08116 209 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 GPS1Q13098 491 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 MYBPHQ13203 477 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SP140Q13342 867 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 CSHL1Q14406 222 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 DAZAP2Q15038 168 aaPredicted RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 CEBPEQ15744 281 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PPP1R3AQ16821 1122 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SLC25A35Q3KQZ1 300 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 ADPRMQ3LIE5 342 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 FBXL19-AS1Q494R0 122 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 LCE2DQ5TA82 110 aaPredicted RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 PRAMEF9Q5VWM5 478 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 LRRC8EQ6NSJ5 796 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 CASC4Q6P4E1 433 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PAOXQ6QHF9 649 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 NXPE4Q6UWF7 544 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SBSNQ6UWP8 590 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 LYPD8Q6UX82 237 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 IL20RBQ6UXL0 311 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 B3GNT6Q6ZMB0 384 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 ABHD13Q7L211 337 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 GSTA5Q7RTV2 222 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 CDC20BQ86Y33 519 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 KRTAP1-3Q8IUG1 177 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 GPALPP1Q8IXQ4 340 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 ZZZ3Q8IYH5 903 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 ZNF321PQ8N8H1 164 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 NAT8LQ8N9F0 302 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 CHDHQ8NE62 594 aaPredicted RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 TRPV3Q8NET8 790 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 OR5M3Q8NGP4 307 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 OR10Q1Q8NGQ4 319 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PTPMT1Q8WUK0 201 aaPredicted RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 SLC5A11Q8WWX8 675 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 MS4A6EQ96DS6 147 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 VMP1Q96GC9 406 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PDLIM5Q96HC4 596 aaKnown RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 ALPK1Q96QP1 1244 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 RASL10BQ96S79 203 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SMC6Q96SB8 1091 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SMR3AQ99954 134 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 GPATCH1Q9BRR8 931 aaKnown RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 CNPPD1Q9BV87 410 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 NPLQ9BXD5 320 aaPredicted RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 POLDIP3Q9BY77 421 aaKnown RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 RBSNQ9H1K0 784 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 CCDC68Q9H2F9 335 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 RHBGQ9H310 441 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PELI2Q9HAT8 420 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 IL1RL2Q9HB29 575 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PROK2Q9HC23 129 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 SH2D2AQ9NP31 389 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 PNO1Q9NRX1 252 aaKnown RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 C20orf96Q9NUD7 363 aaPredicted RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 TUBA8Q9NY65 449 aaPredicted RBP5.66□□□□□ -1.5
VRK3-220ENST00000600259 TAS2R13Q9NYV9 303 aa5.66□□□□□ -1.5
VRK3-220ENST00000600259 CRIM1Q9NZV1 1036 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms