RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CYR61O00622 381 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 TRIM13O60858 407 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 SCELO95171 688 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 ESRRBO95718 433 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 MLYCDO95822 493 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 PDGFAP04085 211 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 BPGMP07738 259 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 FHP07954 510 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 CCL11P51671 97 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 MTTPP55157 894 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 LIM2P55344 173 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 PKNOX1P55347 436 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 POLE2P56282 527 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 MINDY4Q4G0A6 757 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 TTC19Q6DKK2 380 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 OR4C11Q6IEV9 310 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 MED25Q71SY5 747 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 APLFQ8IW19 511 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 PLPP5Q8NEB5 264 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 METTL6Q8TCB7 284 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 UCN3Q969E3 161 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 PKNOX2Q96KN3 472 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 KCNC2Q96PR1 638 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 SERINC2Q96SA4 455 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 NPLQ9BXD5 320 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 MRPL1Q9BYD6 325 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 IQCGQ9H095 443 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 ZNF395Q9H8N7 513 aaPredicted RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 CLK4Q9HAZ1 481 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 SSU72Q9NP77 194 aaKnown RBP13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 MID1IP1Q9NPA3 183 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 NECTIN3Q9NQS3 549 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 PPT2Q9UMR5 302 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 DAPP1Q9UN19 280 aa13.38□□□□□ -0.27
SHKBP1-217ENST00000598558 LOC102723996A0A087X1L8 192 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 MYOCOSA0A1B0GUC4 107 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 A6NL46 340 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 ATXN7O15265 892 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 B3GALT2O43825 422 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 TMPRSS11DO60235 418 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 GBAP04062 536 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 CHRNGP07510 517 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 CELA2AP08217 269 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 DHRS4L1P0CG22 281 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 COX6A1P12074 109 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 RNH1P13489 461 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 NR1D1P20393 614 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 HIST1H1TP22492 207 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 RAB38P57729 211 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 EEF1A2Q05639 463 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 TBL3Q12788 808 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 IFT88Q13099 833 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 CUL3Q13618 768 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 ABRAXAS2Q15018 415 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 PCOLCEQ15113 449 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 AP5B1Q2VPB7 878 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 TUBB8Q3ZCM7 444 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 DCAF10Q5QP82 559 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 MFSD4BQ5TF39 518 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 MRM1Q6IN84 353 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 ANKRD37Q7Z713 158 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 FAM47BQ8NA70 645 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 SELENOMQ8WWX9 145 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 RGMAQ96B86 450 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 REPS1Q96D71 796 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 ABHD17AQ96GS6 310 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 OR1F2PQ96R84 312 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 UBL7Q96S82 380 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 WDR77Q9BQA1 342 aaPredicted RBP13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 ELOVL6Q9H5J4 265 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 ACTL7BQ9Y614 415 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 SCN3AQ9NY46 2000 aa13.37□□□□□ -0.27
SHKBP1-217ENST00000598558 IGKV3D-11A0A0A0MRZ8 115 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 IGHV1-45A0A0A0MS14 117 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 A0A0A6YYD5 115 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 A0A1W2PQ72 361 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 WDR91A4D1P6 747 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 PEX12O00623 359 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 PRKRAO75569 313 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 CEACAM4O75871 244 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SASH3O75995 380 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 IGHEP01854 428 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 PRB1P04280 392 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 MYZAPP0CAP1 466 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 MAOAP21397 527 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 IL10P22301 178 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SSR2P43308 183 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SERPINB4P48594 390 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 HNRNPH2P55795 449 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 WDR4P57081 412 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 MAGOHP61326 146 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 GALNT1Q10472 559 aaPredicted RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 SLAMF1Q13291 335 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 RAPSNQ13702 412 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 ARL13AQ5H913 290 aaPredicted RBP13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 CFAP157Q5JU67 520 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 CLEC6AQ6EIG7 209 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 NIPAL1Q6NVV3 410 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 CROCCP2Q86T23 111 aa13.36□□□□□ -0.27
SHKBP1-217ENST00000598558 PARP9Q8IXQ6 854 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms