RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 WDR55Q9H6Y2 383 aaPredicted RBP11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 LRTM1Q9HBL6 345 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 FAM60AQ9NP50 221 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 AHSPQ9NZD4 102 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 FOXJ2Q9P0K8 574 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 AKAP7Q9P0M2 348 aaPredicted RBP11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 SEMA5BQ9P283 1151 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 PDP2Q9P2J9 529 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 VPS29Q9UBQ0 182 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 PPT2Q9UMR5 302 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 TRIM33Q9UPN9 1127 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 ARL2BPQ9Y2Y0 163 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 PCM1Q15154 2024 aa11.46□□□□□ -0.57
SHKBP1-213ENST00000597325 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TMX2-CTNND1H3BSU7 103 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SRPX2O60687 465 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 PEX11AO75192 247 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SH3BGRLO75368 114 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SEC22BO75396 215 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 MYO1DO94832 1006 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SEMA3DO95025 777 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TGFB1P01137 390 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 STATHP02808 62 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SERPINA6P08185 405 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 LBPP18428 481 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 CSTF2P33240 577 aaKnown RBP eCLIP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 VSX2P58304 361 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 RPL38P63173 70 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 ACSM2AQ08AH3 577 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 MAD2L1Q13257 205 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 CUL3Q13618 768 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TMEM35AQ53FP2 167 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SPIN4Q56A73 249 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TOR1AIP1Q5JTV8 583 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TCTE1Q5JU00 501 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 KHDRBS2Q5VWX1 349 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 ACSM2BQ68CK6 577 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 FRMPD2BQ6IN97 320 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 FBXO42Q6P3S6 717 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TRIM40Q6P9F5 258 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TMPRSS9Q7Z410 1059 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 ARHGAP22Q7Z5H3 698 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 VN1R5Q7Z5H4 357 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SLITRK4Q8IW52 837 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 CACNA2D3Q8IZS8 1091 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 D2HGDHQ8N465 521 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 DNAJC22Q8N4W6 341 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 TTC29Q8NA56 475 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 FNDC5Q8NAU1 212 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 CCDC197Q8NCU1 140 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 SRFBP1Q8NEF9 429 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 OR2T11Q8NH01 316 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 NT5CQ8TCD5 201 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 CREB3L4Q8TEY5 395 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 ABHD17AQ96GS6 310 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 MAELQ96JY0 434 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 EBF4Q9BQW3 602 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 STRADBQ9C0K7 418 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 REXO4Q9GZR2 422 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 OR51B5Q9H339 312 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 AKTIPQ9H8T0 292 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 KCNK13Q9HB14 408 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 C1orf109Q9NX04 203 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 VPS4AQ9UN37 437 aa11.45□□□□□ -0.58
SHKBP1-213ENST00000597325 ZNF469Q96JG9 3925 aaPredicted RBP11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 LOC105369274A0A096LPK9 316 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 LOC102723532A0A0G2JNH3 316 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 TMEM150CB9EJG8 249 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 E9PBE3 544 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 LSM1O15116 133 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 ZSCAN9O15535 394 aaPredicted RBP11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 KLHL41O60662 606 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 PRF1P14222 555 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 ITIH1P19827 911 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 PRPH2P23942 346 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 MAPK1P28482 360 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 ERVK-8P63133 956 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 ACY1Q03154 408 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 TUBB3Q13509 450 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 KCNAB1Q14722 419 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 GPR19Q15760 415 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 SMU1Q2TAY7 513 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 AP5B1Q2VPB7 878 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 LSM12Q3MHD2 195 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 ABHD13Q7L211 337 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 PAGE2Q7Z2X7 111 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 VN1R4Q7Z5H5 301 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 SPATA19Q7Z5L4 167 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 PIGWQ7Z7B1 504 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 GPR135Q8IZ08 494 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 OR4N4Q8N0Y3 316 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 AGBL5Q8NDL9 886 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 RCBTB1Q8NDN9 531 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 GAL3ST3Q96A11 431 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 RGMAQ96B86 450 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 METTL2AQ96IZ6 378 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 OR52B2Q96RD2 323 aa11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 COPS7BQ9H9Q2 264 aaPredicted RBP11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 NOP53Q9NZM5 478 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-213ENST00000597325 PISDQ9UG56 409 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms