RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 MED27Q6P2C8 311 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 KLC3Q6P597 504 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 TRIM40Q6P9F5 258 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 CHSY3Q70JA7 882 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 CRLF3Q8IUI8 442 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 SCUBE1Q8IWY4 988 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 ZNF595Q8IYB9 648 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 ARMC10Q8N2F6 343 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 ADAMTS18Q8TE60 1221 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 ZNF473Q8WTR7 871 aaKnown RBP9.86□□□□□ -0.83
CCDC9-203ENST00000596938 EXT2Q93063 718 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 ISL2Q96A47 359 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 KCNC2Q96PR1 638 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 F2RL3Q96RI0 385 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 TAAR6Q96RI8 345 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 NPAS2Q99743 824 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 SLX1AQ9BQ83 275 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 TBCDQ9BTW9 1192 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 ROGDIQ9GZN7 287 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 CDC42EP4Q9H3Q1 356 aaKnown RBP9.86□□□□□ -0.83
CCDC9-203ENST00000596938 KCMF1Q9P0J7 381 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 ABI3Q9P2A4 366 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 PPIEQ9UNP9 301 aaKnown RBP9.86□□□□□ -0.83
CCDC9-203ENST00000596938 TSC22D4Q9Y3Q8 395 aa9.86□□□□□ -0.83
CCDC9-203ENST00000596938 TNPO3Q9Y5L0 923 aaKnown RBP9.86□□□□□ -0.83
CCDC9-203ENST00000596938 USP9YO00507 2555 aaPredicted RBP9.86□□□□□ -0.83
CCDC9-203ENST00000596938 A0A0G2JN53 185 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 BLACEA4D250 179 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 SAGE2PA6NJ88 616 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 E2F3O00716 465 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 UGDHO60701 494 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CTNSO60931 367 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 KRT38O76015 456 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 RASAL1O95294 804 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 ACSL3O95573 720 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 F10P00742 488 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CRYABP02511 175 aaKnown RBP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 INHBAP08476 426 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 COL6A2P12110 1019 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CNTFP26441 200 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 PIK3CBP42338 1070 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 MSH2P43246 934 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 MAGEA12P43365 314 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 LIM2P55344 173 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 RAB38P57729 211 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 TUBA3CQ13748 450 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 SETDB1Q15047 1291 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 PCBP2Q15366 365 aaKnown RBP eCLIP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 TERF2Q15554 542 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 PFKFB4Q16877 469 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 UBAP2Q5T6F2 1119 aaKnown RBP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 LIPJQ5W064 366 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 FCRLBQ6BAA4 426 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 ADNP2Q6IQ32 1131 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 TUBA3EQ6PEY2 450 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 UBE3DQ7Z6J8 389 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 RPS19BP1Q86WX3 136 aaKnown RBP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CYP4X1Q8N118 509 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 BEST3Q8N1M1 668 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 TEX9Q8N6V9 391 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 HORMAD2Q8N7B1 307 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CEP112Q8N8E3 955 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 C7orf57Q8NEG2 295 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 OR7G3Q8NG95 312 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CMTM7Q96FZ5 175 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 MAGEB10Q96LZ2 347 aaPredicted RBP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 UTP23Q9BRU9 249 aaKnown RBP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 MS4A8Q9BY19 250 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CDCP1Q9H5V8 836 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 TRIM45Q9H8W5 580 aaPredicted RBP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 LYRM4Q9HD34 91 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 PRTFDC1Q9NRG1 225 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 OLAHQ9NV23 265 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 PSD3Q9NYI0 1048 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 ZNF180Q9UJW8 692 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 DAPP1Q9UN19 280 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 SLC5A6Q9Y289 635 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 MRPS33Q9Y291 106 aaKnown RBP9.85□□□□□ -0.83
CCDC9-203ENST00000596938 PCDHGA11Q9Y5H2 935 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 CLDN16Q9Y5I7 305 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 IKBKGQ9Y6K9 419 aa9.85□□□□□ -0.83
CCDC9-203ENST00000596938 PTPN13Q12923 2485 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 UTP20O75691 2785 aaKnown RBP9.84□□□□□ -0.83
CCDC9-203ENST00000596938 MAN1A2O60476 641 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 SCELO95171 688 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 RBP1P09455 135 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 GFAPP14136 432 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 ATP5A1P25705 553 aaKnown RBP9.84□□□□□ -0.83
CCDC9-203ENST00000596938 ARFIP1P53367 373 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 ZNF766Q5HY98 468 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 DEPDC1Q5TB30 811 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 KHDRBS2Q5VWX1 349 aaKnown RBP9.84□□□□□ -0.83
CCDC9-203ENST00000596938 GRHL2Q6ISB3 625 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 TAOK1Q7L7X3 1001 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 IFT20Q8IY31 132 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 ACOT4Q8N9L9 421 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 APCDD1LQ8NCL9 501 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 MDS2Q8NDY4 140 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 B3GNT7Q8NFL0 401 aa9.84□□□□□ -0.83
CCDC9-203ENST00000596938 NR4A3Q92570 626 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms