RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ZWILCHQ9H900 591 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 B3GAT2Q9NPZ5 323 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 RBM28Q9NW13 759 aaKnown RBP4.35□□□□□ -1.71
NUP88-213ENST00000576862 NDE1Q9NXR1 346 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 RRP15Q9Y3B9 282 aaKnown RBP4.35□□□□□ -1.71
NUP88-213ENST00000576862 SELENOKQ9Y6D0 94 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 PIK3R4Q99570 1358 aa4.35□□□□□ -1.71
NUP88-213ENST00000576862 CFAP65Q6ZU64 1925 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 A0A087WV48 116 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 A0A1W2PPR1 153 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 TLX2O43763 284 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 LUC7L3O95232 432 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 FDPSP14324 419 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 MYOGP15173 224 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 GATA1P15976 413 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 STMN1P16949 149 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 EPORP19235 508 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 PDHA2P29803 388 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 HPDP32754 393 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 CRKLP46109 303 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 LRRC74AQ0VAA2 488 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 SLMAPQ14BN4 828 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 UGCGQ16739 394 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 GDPGP1Q6ZNW5 385 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 C11orf57Q6ZUT1 292 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 GPRIN3Q6ZVF9 776 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 SLFN11Q7Z7L1 901 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 AMIGO1Q86WK6 493 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 IQCF2Q8IXL9 164 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 C9orf43Q8TAL5 461 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 RAD54LQ92698 747 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 SNX21Q969T3 373 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 SYAP1Q96A49 352 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 ATXN7L3BQ96GX2 97 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 RBM41Q96IZ5 413 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 FAM210AQ96ND0 272 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 GPATCH1Q9BRR8 931 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 MTHFD2LQ9H903 347 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 MRGBPQ9NV56 204 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 HOXC10Q9NYD6 342 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 HACD3Q9P035 362 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 MTRRQ9UBK8 725 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 IL36AQ9UHA7 158 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 PILRBQ9UKJ0 227 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 GTF3C4Q9UKN8 822 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 SNX7Q9UNH6 387 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 ATP6V0A2Q9Y487 856 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 RNF123Q5XPI4 1314 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 NPHP4O75161 1426 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 EDC4Q6P2E9 1401 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 COL5A2P05997 1499 aaPredicted RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 NKTRP30414 1462 aaKnown RBP4.34□□□□□ -1.71
NUP88-213ENST00000576862 USP32Q8NFA0 1604 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 MYO5BQ9ULV0 1848 aa4.34□□□□□ -1.71
NUP88-213ENST00000576862 RIMS1Q86UR5 1692 aaKnown RBP4.33□□□□□ -1.72
NUP88-213ENST00000576862 ADGRB2O60241 1585 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 DIP2AQ14689 1571 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 CDC42BPGQ6DT37 1551 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 SSH2Q76I76 1423 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 PNPLA6Q8IY17 1366 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 ACEP12821 1306 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 TTC21BQ7Z4L5 1316 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 ECE2O60344 883 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 CYTIPO60759 359 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 SAP30O75446 220 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 AADACP22760 399 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 GATA2P23769 480 aaPredicted RBP4.33□□□□□ -1.72
NUP88-213ENST00000576862 SHC1P29353 583 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 ATP6V1E1P36543 226 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 CDX1P47902 265 aaPredicted RBP4.33□□□□□ -1.72
NUP88-213ENST00000576862 SULT2A1Q06520 285 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 PPP2R5CQ13362 524 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 TNK1Q13470 666 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 SCARB2Q14108 478 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 FAM189A2Q15884 450 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 DUSP5Q16690 384 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 TATDN1Q6P1N9 297 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 MOXD1Q6UVY6 613 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 BTNL8Q6UX41 500 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 DNAJB7Q7Z6W7 309 aaPredicted RBP4.33□□□□□ -1.72
NUP88-213ENST00000576862 PIGWQ7Z7B1 504 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 TCEANCQ8N8B7 351 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 CCDC63Q8NA47 563 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 OR4C15Q8NGM1 316 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 MIPOL1Q8TD10 442 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 ITFG2Q969R8 447 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 NEDD4LQ96PU5 975 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 MGME1Q9BQP7 344 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 POLKQ9UBT6 870 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 SUN2Q9UH99 717 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 PCSK1NQ9UHG2 260 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 CTNNA3Q9UI47 895 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 MUTYHQ9UIF7 546 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 FBXL4Q9UKA2 621 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 AGTPBP1Q9UPW5 1226 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 MOB4Q9Y3A3 225 aa4.33□□□□□ -1.72
NUP88-213ENST00000576862 USP6P35125 1406 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 ANKARQ7Z5J8 1434 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 SYNJ2BP-COX16A0A087WUM0 186 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 FAM86B1E9PN63 330 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms