RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CCNB1IP1Q9NPC3 277 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 PRKAG2Q9UGJ0 569 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 ICKQ9UPZ9 632 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TESMINQ9Y4I5 508 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 KIAA1549LQ6ZVL6 1849 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 RGS10O43665 173 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PCDHGA12O60330 932 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 GABARAPO95166 117 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TBX6O95947 436 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 TNFRSF1BP20333 461 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 NR4A1P22736 598 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 IL12RB1P42701 662 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MAP2K4P45985 399 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MASP1P48740 699 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PXNP49023 591 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 NUBP1P53384 320 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 CNTN1Q12860 1018 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ARHGAP19Q14CB8 494 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 CYP2A13Q16696 494 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ZNF630Q2M218 657 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 CRB2Q5IJ48 1285 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 SYT6Q5T7P8 510 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 PNCKQ6P2M8 343 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 DSG4Q86SJ6 1040 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 HEATR4Q86WZ0 1026 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ENTHD1Q8IYW4 607 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 DRAXINQ8NBI3 349 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 ST13P5Q8NFI4 369 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 OR4C15Q8NGM1 316 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 OR5AK3PQ8NH89 298 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 APH1BQ8WW43 257 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 IPCEF1Q8WWN9 437 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 SUSD6Q92537 303 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ZNF300Q96RE9 604 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 FEVQ99581 238 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 RHNO1Q9BSD3 238 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 RHBGQ9H310 441 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PRSS16Q9NQE7 514 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 RASSF1Q9NS23 344 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 THSD1Q9NS62 852 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TBC1D23Q9NUY8 699 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 CUEDC1Q9NWM3 386 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 AHSPQ9NZD4 102 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TAAR2Q9P1P5 351 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TDRKHQ9Y2W6 561 aaKnown RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 MAP4K5Q9Y4K4 846 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PCDHGA6Q9Y5G7 932 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TMEM238LA0A1B0GVL6 79 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TBC1D3BA6NDS4 549 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PRAMEF25A6NGN4 478 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PLPP1O14494 284 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 AXIN1O15169 862 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MAN1A2O60476 641 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 FAM20BO75063 409 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 SEMA3DO95025 777 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 KRT75O95678 551 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MT-ND2P03891 347 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ARAFP10398 606 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MYOGP15173 224 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 KRT20P35900 424 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 OR1E2P47887 323 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MLLT10P55197 1068 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 C21orf59P57076 290 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PCBP3P57721 371 aaKnown RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 MVKQ03426 396 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TMED1Q13445 227 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PIP5KL1Q5T9C9 394 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 Q6ZNX1 250 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PRSS48Q7RTY5 328 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ADGRD2Q7Z7M1 963 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 LRRTM4Q86VH4 590 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 C17orf64Q86WR6 236 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MMP21Q8N119 569 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 SVOPQ8N4V2 548 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 SLC5A8Q8N695 610 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 OR5K2Q8NHB8 316 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 GIMAP1Q8WWP7 306 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 YIPF6Q96EC8 236 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 PLEKHA8Q96JA3 519 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 SIGLEC11Q96RL6 698 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 TMEM121BQ9BXQ6 578 aaPredicted RBP9.63□□□□□ -0.87
VPS53-220ENST00000576149 EPS8L2Q9H6S3 715 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ZDHHC4Q9NPG8 344 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 MIEF1Q9NQG6 463 aa9.63□□□□□ -0.87
VPS53-220ENST00000576149 ANTXRLA6NF34 631 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 PFDN1O60925 122 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 IFNA14P01570 189 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 EPHX1P07099 455 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ANXA8P13928 327 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 ITGA2P17301 1181 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 DDCP20711 480 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 UQCRC2P22695 453 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 CSNK2BP67870 215 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 CDK3Q00526 305 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 CLCA4Q14CN2 919 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 MICAQ29983 383 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 DEPDC1Q5TB30 811 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 KHDRBS2Q5VWX1 349 aaKnown RBP9.62□□□□□ -0.87
VPS53-220ENST00000576149 METRNLQ641Q3 311 aa9.62□□□□□ -0.87
VPS53-220ENST00000576149 GPR153Q6NV75 609 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms