RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TBX19O60806 448 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 GP1BAP07359 652 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 FURINP09958 794 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ANKRD34CP0C6C1 535 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 CD59P13987 128 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 DRD2P14416 443 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 NELFEP18615 380 aaKnown RBP12.99□□□□□ -0.33
CCDC40-209ENST00000573474 DDCP20711 480 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ACP1P24666 158 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 CERS1P27544 350 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 PGM1P36871 562 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 CORO7P57737 925 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 PSME3P61289 254 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 KCNJ2P63252 427 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 PHC1P78364 1004 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 PDE7AQ13946 482 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 NFYCQ13952 458 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 MAPKAPK3Q16644 382 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 NDUFA9Q16795 377 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 PAGE3Q5JUK9 113 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ANXA8L1Q5VT79 327 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 PRMT9Q6P2P2 845 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 SLC2A7Q6PXP3 512 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ZNF574Q6ZN55 896 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-209ENST00000573474 PRR23CQ6ZRP0 262 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 DGLUCYQ7Z3D6 616 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 GPR180Q86V85 440 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 DNAJB8Q8NHS0 232 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ITCHQ96J02 903 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 HOPXQ9BPY8 73 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-209ENST00000573474 DUSP26Q9BV47 211 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 EDEM2Q9BV94 578 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 FAIM2Q9BWQ8 316 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 BHLHE41Q9C0J9 482 aaPredicted RBP12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ENAMQ9NRM1 1142 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 STARD5Q9NSY2 213 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ATAD3AQ9NVI7 634 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 FAM120CQ9NX05 1096 aaKnown RBP12.99□□□□□ -0.33
CCDC40-209ENST00000573474 SH3BP4Q9P0V3 963 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 NCDNQ9UBB6 729 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 RRP15Q9Y3B9 282 aaKnown RBP12.99□□□□□ -0.33
CCDC40-209ENST00000573474 ASB4Q9Y574 426 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 DNAH14Q0VDD8 3507 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 LAMA1P25391 3075 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 GPR179Q6PRD1 2367 aa12.99□□□□□ -0.33
CCDC40-209ENST00000573474 MDC1Q14676 2089 aaKnown RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 FITM1A5D6W6 292 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 NTN3O00634 580 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 CASC3O15234 703 aaKnown RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 B3GALT2O43825 422 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 B3GALT4O96024 378 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 LMNAP02545 664 aaKnown RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 CTSBP07858 339 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 MSL3P1P0C860 447 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 LAMP1P11279 417 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 PIM1P11309 404 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 NBL1P41271 181 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 EMP3P54852 163 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 MC1RQ01726 317 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 FOXM1Q08050 763 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 LRRC74AQ0VAA2 488 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 TRMT5Q32P41 509 aaKnown RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 DEFB134Q4QY38 66 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 GARNL3Q5VVW2 1013 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 OR4F3Q6IEY1 312 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 ANKRD26P1Q6NSI1 321 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 NIPAL1Q6NVV3 410 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 C8orf82Q6P1X6 216 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 TMPRSS9Q7Z410 1059 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 ARHGAP22Q7Z5H3 698 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 ARHGEF39Q8N4T4 335 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 NATD1Q8N6N6 113 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 VPS37AQ8NEZ2 397 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 GTF2H4Q92759 462 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 PPCDCQ96CD2 204 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 LRRC58Q96CX6 371 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 ZNF764Q96H86 408 aaPredicted RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 GFM1Q96RP9 751 aaKnown RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 THTPAQ9BU02 230 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 SYNDIG1Q9H7V2 258 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 IL1RL2Q9HB29 575 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 MIEF1Q9NQG6 463 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 PRPF19Q9UMS4 504 aaKnown RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 MAN2B2Q9Y2E5 1009 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 MRPS2Q9Y399 296 aaKnown RBP12.98□□□□□ -0.33
CCDC40-209ENST00000573474 PCDHGA7Q9Y5G6 932 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 CACNA1HO95180 2353 aa12.98□□□□□ -0.33
CCDC40-209ENST00000573474 IGHV5-10-1A0A0J9YXX1 117 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 PRSS51A0A1B0GVH4 220 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 PROM1O43490 865 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 GALR3O60755 368 aaPredicted RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 SCN2BO60939 215 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 KCNH1O95259 989 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 TRPC1P48995 793 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 HNRNPFP52597 415 aaKnown RBP12.97□□□□□ -0.33
CCDC40-209ENST00000573474 WNT3P56703 355 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 SKP1P63208 163 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 FAM53BQ14153 422 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 KCNAB1Q14722 419 aa12.97□□□□□ -0.33
CCDC40-209ENST00000573474 GRM7Q14831 915 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms