RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SUN3Q8TAQ9 357 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 CREB3L4Q8TEY5 395 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 UBTD2Q8WUN7 234 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 SLC44A1Q8WWI5 657 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 ESAMQ96AP7 390 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 WDR34Q96EX3 536 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 SCYL1Q96KG9 808 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 MAGEB10Q96LZ2 347 aaPredicted RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 ATOH8Q96SQ7 321 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 LPAR4Q99677 370 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 RHOXF2Q9BQY4 288 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 CENPKQ9BS16 269 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 NPLQ9BXD5 320 aaPredicted RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 ROGDIQ9GZN7 287 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 REXO4Q9GZR2 422 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 RHBGQ9H310 441 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 AGPAT4Q9NRZ5 378 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 CPSF2Q9P2I0 782 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 TMCO1Q9UM00 188 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 NFU1Q9UMS0 254 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 MRPS33Q9Y291 106 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 TNPO3Q9Y5L0 923 aaKnown RBP7.63□□□□□ -1.19
VPS53-214ENST00000572607 SPACA6W5XKT8 324 aa7.63□□□□□ -1.19
VPS53-214ENST00000572607 LRBAP50851 2863 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 SHANK1Q9Y566 2161 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 IGHV3-20A0A0C4DH32 117 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 SYNDIG1LA6NDD5 238 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 CLDN4O14493 209 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 MSTNO14793 375 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 PRMT3O60678 531 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 SMIM24O75264 130 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 SEC24DO94855 1032 aaPredicted RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 ALDOAP04075 364 aaKnown RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 ABHD2P08910 425 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ECHS1P30084 290 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 KCNC1P48547 511 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 CD97P48960 835 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 PLA2G16P53816 162 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ALDH18A1P54886 795 aaKnown RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 MTTPP55157 894 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 OR4D2P58180 307 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 TAS2R50P59544 299 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 SNRPNP63162 240 aaKnown RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 ZNF33BQ06732 778 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 Q0VFX4 171 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 HYAL2Q12891 473 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ZNF169Q14929 603 aaPredicted RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 SETDB1Q15047 1291 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 PFKFB4Q16877 469 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 PLEKHN1Q494U1 663 aaPredicted RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 SFT2D3Q587I9 215 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 B3GNTL1Q67FW5 361 aaPredicted RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 MED27Q6P2C8 311 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 PAPD4Q6PIY7 484 aaKnown RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 IGFL2Q6UWQ7 119 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 QSOX2Q6ZRP7 698 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 LANCL3Q6ZV70 420 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 CENPLQ8N0S6 344 aaPredicted RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 CA13Q8N1Q1 262 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 SIRT6Q8N6T7 355 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 TEX9Q8N6V9 391 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 Q8NA96 180 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 PLPP5Q8NEB5 264 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 OR2L5Q8NG80 312 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 UHMK1Q8TAS1 419 aaKnown RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 TSLPQ969D9 159 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ATP6V1E2Q96A05 226 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 REPS1Q96D71 796 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 IMMP1LQ96LU5 166 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 PTCHD1Q96NR3 888 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 KCNC2Q96PR1 638 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 CCDC77Q9BR77 488 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 MESP1Q9BRJ9 268 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS53-214ENST00000572607 KLHL31Q9H511 634 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ACTR8Q9H981 624 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 KCNK13Q9HB14 408 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ZBTB20Q9HC78 741 aaPredicted RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 COPG2Q9UBF2 871 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ADGRE2Q9UHX3 823 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 ZNF180Q9UJW8 692 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 MMACHCQ9Y4U1 282 aa7.62□□□□□ -1.19
VPS53-214ENST00000572607 COPG1Q9Y678 874 aaKnown RBP7.62□□□□□ -1.19
VPS53-214ENST00000572607 CSMD1Q96PZ7 3565 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 FER1L5A0AVI2 2057 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 TRAV17A0A0B4J275 112 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 A0A0G2JN53 185 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 IQANK1A0A1B0GTG1 560 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 HMX2A2RU54 273 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 LRIT2A6NDA9 550 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 A8MUI8 341 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 TRIM49D1C9J1S8 452 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 B3GALT4O96024 378 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 CELA2AP08217 269 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 SNRPAP09012 282 aaKnown RBP7.61□□□□□ -1.19
VPS53-214ENST00000572607 SMIM10L1P0DMW3 83 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 COL6A2P12110 1019 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 SOX11P35716 441 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 CASP2P42575 452 aa7.61□□□□□ -1.19
VPS53-214ENST00000572607 TSFMP43897 325 aaKnown RBP7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms