RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 UROSP10746 265 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 TSPAN8P19075 237 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 CSTF3Q12996 717 aaKnown RBP19.49■□□□□ 0.71
VPS53-210ENST00000571456 MRPL14Q6P1L8 145 aaKnown RBP19.49■□□□□ 0.71
VPS53-210ENST00000571456 FAM198BQ6UWH4 519 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 RPS27LQ71UM5 84 aaKnown RBP19.49■□□□□ 0.71
VPS53-210ENST00000571456 CDYL2Q8N8U2 506 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 ANKRD42Q8N9B4 389 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 ZCCHC10Q8TBK6 192 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 CT55Q8WUE5 264 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 SELENOMQ8WWX9 145 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 RGMAQ96B86 450 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 MECRQ9BV79 373 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 TGIF2Q9GZN2 237 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 COPS7BQ9H9Q2 264 aaPredicted RBP19.49■□□□□ 0.71
VPS53-210ENST00000571456 PFDN4Q9NQP4 134 aa19.49■□□□□ 0.71
VPS53-210ENST00000571456 FARSAQ9Y285 508 aaKnown RBP19.49■□□□□ 0.71
VPS53-210ENST00000571456 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.49■□□□□ 0.71
VPS53-210ENST00000571456 POLQO75417 2590 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 SCN3AQ9NY46 2000 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 A0A0A6YYC8 382 aaPredicted RBP19.48■□□□□ 0.71
VPS53-210ENST00000571456 LOC101059948A0A1B0GTJ6 334 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 I3L1I5 382 aaPredicted RBP19.48■□□□□ 0.71
VPS53-210ENST00000571456 KLHL18O94889 574 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 SCELO95171 688 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 ZNF888P0CJ79 500 aaPredicted RBP19.48■□□□□ 0.71
VPS53-210ENST00000571456 PTPN4P29074 926 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 HNRNPH1P31943 449 aaKnown RBP19.48■□□□□ 0.71
VPS53-210ENST00000571456 KCNAB2Q13303 367 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 DDX39BQ13838 428 aaKnown RBP19.48■□□□□ 0.71
VPS53-210ENST00000571456 ATG16L1Q676U5 607 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 ABHD17CQ6PCB6 329 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 MED25Q71SY5 747 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 CUZD1Q86UP6 607 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 C7orf57Q8NEG2 295 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 METTL2AQ96IZ6 378 aaKnown RBP19.48■□□□□ 0.71
VPS53-210ENST00000571456 OR1F2PQ96R84 312 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 SERINC2Q96SA4 455 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 MTERF1Q99551 399 aaKnown RBP19.48■□□□□ 0.71
VPS53-210ENST00000571456 CCT7Q99832 543 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 MACROD1Q9BQ69 325 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 NAALAD2Q9Y3Q0 740 aa19.48■□□□□ 0.71
VPS53-210ENST00000571456 SYNDIG1LA6NDD5 238 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 MAGEB17A8MXT2 336 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 MANBAO00462 879 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 FFAR3O14843 346 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 AZIN1O14977 448 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 GPR42O15529 346 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 MED26O95402 600 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 TBX6O95947 436 aaPredicted RBP19.47■□□□□ 0.71
VPS53-210ENST00000571456 IGHEP01854 428 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 IL1RNP18510 177 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 OR1D4P47884 311 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 RAP1GDS1P52306 607 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 MTTPP55157 894 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 WDR4P57081 412 aaKnown RBP19.47■□□□□ 0.71
VPS53-210ENST00000571456 RPS13P62277 151 aaKnown RBP19.47■□□□□ 0.71
VPS53-210ENST00000571456 PPP2R2AP63151 447 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 CHI3L2Q15782 390 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 AP5B1Q2VPB7 878 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 DEFB134Q4QY38 66 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 ARL13AQ5H913 290 aaPredicted RBP19.47■□□□□ 0.71
VPS53-210ENST00000571456 BORAQ6PGQ7 559 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 CLYBLQ8N0X4 340 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 OR9A4Q8NGU2 314 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 VPS50Q96JG6 964 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 PAIP2Q9BPZ3 127 aaKnown RBP19.47■□□□□ 0.71
VPS53-210ENST00000571456 TUBD1Q9UJT1 453 aa19.47■□□□□ 0.71
VPS53-210ENST00000571456 MRPS2Q9Y399 296 aaKnown RBP19.47■□□□□ 0.71
VPS53-210ENST00000571456 A0A1B0GTL3 188 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 VSTM2BA6NLU5 285 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 UBFD1O14562 309 aaKnown RBP19.46■□□□□ 0.71
VPS53-210ENST00000571456 B3GALT2O43825 422 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 TGFB1P01137 390 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 LIFP15018 202 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 POLE2P56282 527 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 MLIPQ5VWP3 458 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 FAM199XQ6PEV8 388 aaPredicted RBP19.46■□□□□ 0.71
VPS53-210ENST00000571456 COX15Q7KZN9 410 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 PAGE2Q7Z2X7 111 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 ARFGAP2Q8N6H7 521 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 ENDOVQ8N8Q3 282 aaKnown RBP19.46■□□□□ 0.71
VPS53-210ENST00000571456 AMER3Q8N944 861 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 OR2Y1Q8NGV0 311 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 ZBTB9Q96C00 473 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 QRFPRQ96P65 431 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 IP6K3Q96PC2 410 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 F2RL3Q96RI0 385 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 KLHL31Q9H511 634 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 SLC22A11Q9NSA0 550 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 TRPC4Q9UBN4 977 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 ADAM29Q9UKF5 820 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 TCFL5Q9UL49 500 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 SPACA6W5XKT8 324 aa19.46■□□□□ 0.71
VPS53-210ENST00000571456 ZNF891A8MT65 544 aaPredicted RBP19.45■□□□□ 0.7
VPS53-210ENST00000571456 KLF11O14901 512 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 HSPA4LO95757 839 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 PDYNP01213 254 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 STATHP02808 62 aa19.45■□□□□ 0.7
VPS53-210ENST00000571456 JAK1P23458 1154 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms