RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SLC1A6P48664 564 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 RGS7P49802 495 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 MFAP3P55082 362 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 GSTO1P78417 241 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 RBBP4Q09028 425 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 ZNF79Q15937 498 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 TAZQ16635 292 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 LRRC37A5PQ49AS3 106 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 RFTN2Q52LD8 501 aaPredicted RBP2.11□□□□□ -2.07
VPS35-207ENST00000568191 ZNF542PQ5EBM4 170 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 HERC4Q5GLZ8 1057 aaPredicted RBP2.11□□□□□ -2.07
VPS35-207ENST00000568191 REP15Q6BDI9 236 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 ARMCX5Q6P1M9 558 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 ANKRD33Q7Z3H0 272 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 COX8CQ7Z4L0 72 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 GPR141Q7Z602 305 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 PCGF5Q86SE9 256 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 HSCBQ8IWL3 235 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 CAMKVQ8NCB2 501 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 NABP1Q96AH0 204 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 SDHCQ99643 169 aaPredicted RBP2.11□□□□□ -2.07
VPS35-207ENST00000568191 NAA11Q9BSU3 229 aaPredicted RBP2.11□□□□□ -2.07
VPS35-207ENST00000568191 ALKBH7Q9BT30 221 aaPredicted RBP2.11□□□□□ -2.07
VPS35-207ENST00000568191 PINK1Q9BXM7 581 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 SPATA2Q9UM82 520 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 SNX7Q9UNH6 387 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 FAM86B1E9PN63 330 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 PGRMC2O15173 223 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 PIGRP01833 764 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 IGHG1P01857 330 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 FAM86B2P0C5J1 330 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 GPX3P22352 226 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 EEF1DP29692 281 aaKnown RBP2.1□□□□□ -2.07
VPS35-207ENST00000568191 CRKLP46109 303 aaKnown RBP2.1□□□□□ -2.07
VPS35-207ENST00000568191 GMPSP49915 693 aaPredicted RBP2.1□□□□□ -2.07
VPS35-207ENST00000568191 CYLC2Q14093 348 aaPredicted RBP2.1□□□□□ -2.07
VPS35-207ENST00000568191 CRMP1Q14194 572 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 MAPK11Q15759 364 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 UGCGQ16739 394 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 SLC22A6Q4U2R8 563 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 C2orf83Q53S99 150 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 SLC30A6Q6NXT4 461 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 SLC27A4Q6P1M0 643 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 MOXD1Q6UVY6 613 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 ADCK2Q7Z695 626 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 ZC3H3Q8IXZ2 948 aaKnown RBP2.1□□□□□ -2.07
VPS35-207ENST00000568191 OR8H2Q8N162 312 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 CCDC191Q8NCU4 936 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 OR6F1Q8NGZ6 308 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 FER1L6-AS2Q96M78 137 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 HSD17B14Q9BPX1 270 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 PLEKHA3Q9HB20 300 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 SENP1Q9P0U3 644 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 RSPH14Q9UHP6 348 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 HBS1LQ9Y450 684 aaKnown RBP2.1□□□□□ -2.07
VPS35-207ENST00000568191 LIPGQ9Y5X9 500 aa2.1□□□□□ -2.07
VPS35-207ENST00000568191 A8MXE2 369 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 FBP2O00757 339 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 SRPX2O60687 465 aaPredicted RBP2.09□□□□□ -2.07
VPS35-207ENST00000568191 MOCS2O96007 188 aaPredicted RBP2.09□□□□□ -2.07
VPS35-207ENST00000568191 SPP1P10451 314 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 SKILP12757 684 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 ZNF19P17023 458 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 CDX1P47902 265 aaPredicted RBP2.09□□□□□ -2.07
VPS35-207ENST00000568191 PEX3P56589 373 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 PRKCEQ02156 737 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 ITPK1Q13572 414 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 CHST3Q7LGC8 479 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 ST6GALNAC6Q969X2 333 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 RMDN1Q96DB5 314 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 ZBED6CLQ96FA7 236 aaPredicted RBP2.09□□□□□ -2.07
VPS35-207ENST00000568191 PPP1R16AQ96I34 528 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 SLC25A23Q9BV35 468 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 UBQLN3Q9H347 655 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 CLIC5Q9NZA1 410 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 UBQLN2Q9UHD9 624 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 NIP7Q9Y221 180 aaKnown RBP eCLIP2.09□□□□□ -2.07
VPS35-207ENST00000568191 NTNG1Q9Y2I2 539 aa2.09□□□□□ -2.07
VPS35-207ENST00000568191 SALL1Q9NSC2 1324 aa2.09□□□□□ -2.08
VPS35-207ENST00000568191 RALGAPA1Q6GYQ0 2036 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 TEX48A0A1B0GUV7 120 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 SRRM4A7MD48 611 aaKnown RBP2.08□□□□□ -2.08
VPS35-207ENST00000568191 A8MU76 341 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 PRSS46E5RG02 174 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 E7ENQ6 273 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 CDX4O14627 284 aaPredicted RBP2.08□□□□□ -2.08
VPS35-207ENST00000568191 TNFSF11O14788 317 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 HDAC3O15379 428 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 MLNRO43193 412 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 FIBPO43427 364 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 RHBDL1O75783 438 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 PGLSO95336 258 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 APBB3O95704 486 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 FGF19O95750 216 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 CALCAP01258 141 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 ODC1P11926 461 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 KRT3P12035 628 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 EEF2P13639 858 aaKnown RBP2.08□□□□□ -2.08
VPS35-207ENST00000568191 PSMB4P28070 264 aa2.08□□□□□ -2.08
VPS35-207ENST00000568191 PRKCIP41743 596 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms