RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TMEM79Q9BSE2 394 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 REXO4Q9GZR2 422 aaKnown RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 EHD1Q9H4M9 534 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 CNOT10Q9H9A5 744 aaKnown RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 PRTFDC1Q9NRG1 225 aa15.01□□□□□ -0.01
CLN3-229ENST00000567963 PNO1Q9NRX1 252 aaKnown RBP15.01□□□□□ -0.01
CLN3-229ENST00000567963 A0A088AWK7 358 aa15□□□□□ -0.01
CLN3-229ENST00000567963 TRBV11-1A0A0K0K1C0 115 aa15□□□□□ -0.01
CLN3-229ENST00000567963 TGFBR3LH3BV60 316 aa15□□□□□ -0.01
CLN3-229ENST00000567963 CLDN4O14493 209 aa15□□□□□ -0.01
CLN3-229ENST00000567963 CLGNO14967 610 aa15□□□□□ -0.01
CLN3-229ENST00000567963 ZNHIT1O43257 154 aa15□□□□□ -0.01
CLN3-229ENST00000567963 B3GALT2O43825 422 aa15□□□□□ -0.01
CLN3-229ENST00000567963 PRAMEF4O60810 478 aa15□□□□□ -0.01
CLN3-229ENST00000567963 ABOP16442 354 aa15□□□□□ -0.01
CLN3-229ENST00000567963 ZNF10P21506 573 aaPredicted RBP15□□□□□ -0.01
CLN3-229ENST00000567963 PLA2G16P53816 162 aa15□□□□□ -0.01
CLN3-229ENST00000567963 MRPS25P82663 173 aaKnown RBP15□□□□□ -0.01
CLN3-229ENST00000567963 HSF1Q00613 529 aa15□□□□□ -0.01
CLN3-229ENST00000567963 FBXO48Q5FWF7 155 aa15□□□□□ -0.01
CLN3-229ENST00000567963 CDKL4Q5MAI5 379 aa15□□□□□ -0.01
CLN3-229ENST00000567963 PRAMEF9Q5VWM5 478 aa15□□□□□ -0.01
CLN3-229ENST00000567963 SULT1C3Q6IMI6 304 aa15□□□□□ -0.01
CLN3-229ENST00000567963 CYS1Q717R9 158 aa15□□□□□ -0.01
CLN3-229ENST00000567963 VN1R5Q7Z5H4 357 aa15□□□□□ -0.01
CLN3-229ENST00000567963 GPSM1Q86YR5 675 aa15□□□□□ -0.01
CLN3-229ENST00000567963 SULF2Q8IWU5 870 aa15□□□□□ -0.01
CLN3-229ENST00000567963 TMEM52Q8NDY8 209 aa15□□□□□ -0.01
CLN3-229ENST00000567963 OR2L5Q8NG80 312 aa15□□□□□ -0.01
CLN3-229ENST00000567963 CDKL2Q92772 493 aa15□□□□□ -0.01
CLN3-229ENST00000567963 ESAMQ96AP7 390 aa15□□□□□ -0.01
CLN3-229ENST00000567963 TSPAN17Q96FV3 270 aa15□□□□□ -0.01
CLN3-229ENST00000567963 PHF12Q96QT6 1004 aa15□□□□□ -0.01
CLN3-229ENST00000567963 DNAJC11Q9NVH1 559 aa15□□□□□ -0.01
CLN3-229ENST00000567963 WWOXQ9NZC7 414 aa15□□□□□ -0.01
CLN3-229ENST00000567963 ZNF223Q9UK11 482 aaPredicted RBP15□□□□□ -0.01
CLN3-229ENST00000567963 FBXW2Q9UKT8 454 aa15□□□□□ -0.01
CLN3-229ENST00000567963 ZNF490Q9ULM2 529 aaPredicted RBP15□□□□□ -0.01
CLN3-229ENST00000567963 KLF13Q9Y2Y9 288 aaPredicted RBP15□□□□□ -0.01
CLN3-229ENST00000567963 ASB1Q9Y576 335 aa15□□□□□ -0.01
CLN3-229ENST00000567963 ADGRG4Q8IZF6 3080 aa15□□□□□ -0.01
CLN3-229ENST00000567963 KLRC4-KLRK1H3BQV0 150 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 FANCGO15287 622 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 PHGDHO43175 533 aaKnown RBP14.99□□□□□ -0.01
CLN3-229ENST00000567963 ITGA10O75578 1167 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 CD1DP15813 335 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 PPP2R1BP30154 601 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 HPDP32754 393 aaPredicted RBP14.99□□□□□ -0.01
CLN3-229ENST00000567963 PTGER4P35408 488 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 HNRNPFP52597 415 aaKnown RBP14.99□□□□□ -0.01
CLN3-229ENST00000567963 SLC13A2Q13183 592 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 CDSNQ15517 529 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 TRIM40Q6P9F5 258 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 DOLPP1Q86YN1 238 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 ZNF595Q8IYB9 648 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 TMEM156Q8N614 296 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 POGLUT1Q8NBL1 392 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 AGAP11Q8TF27 550 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 NCLNQ969V3 563 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 PTCD3Q96EY7 689 aaKnown RBP14.99□□□□□ -0.01
CLN3-229ENST00000567963 VMP1Q96GC9 406 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 GPR22Q99680 433 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 RBBP8Q99708 897 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 CPNE1Q99829 537 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 ERP44Q9BS26 406 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 SAYSD1Q9NPB0 183 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 WHRNQ9P202 907 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 TXNDC16Q9P2K2 825 aa14.99□□□□□ -0.01
CLN3-229ENST00000567963 MRPS33Q9Y291 106 aaKnown RBP14.99□□□□□ -0.01
CLN3-229ENST00000567963 PDZD2O15018 2839 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 CYR61O00622 381 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 EIF3HO15372 352 aaKnown RBP eCLIP14.98□□□□□ -0.01
CLN3-229ENST00000567963 STK16O75716 305 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 CLDN14O95500 239 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 SNRPB2P08579 225 aaKnown RBP14.98□□□□□ -0.01
CLN3-229ENST00000567963 STMN1P16949 149 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 HSPA7P48741 367 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 MEOX1P50221 254 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 MTTPP55157 894 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 LIM2P55344 173 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 ATP6V0D1P61421 351 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 CALCOCO2Q13137 446 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 DOC2AQ14183 400 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 OR4D1Q15615 310 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 XKR6Q5GH73 641 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 ADNP2Q6IQ32 1131 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 ABHD17CQ6PCB6 329 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 C3orf62Q6ZUJ4 267 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 NCCRP1Q6ZVX7 275 aaPredicted RBP14.98□□□□□ -0.01
CLN3-229ENST00000567963 FGD2Q7Z6J4 655 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 CYP4Z2PQ8N1L4 340 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 FAM47BQ8NA70 645 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 C16orf52Q8NHV5 167 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 WDR34Q96EX3 536 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 UBXN10Q96LJ8 280 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 SERINC2Q96SA4 455 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 DPH5Q9H2P9 285 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 PRDM7Q9NQW5 492 aa14.98□□□□□ -0.01
CLN3-229ENST00000567963 PTBP2Q9UKA9 531 aaKnown RBP14.98□□□□□ -0.01
CLN3-229ENST00000567963 DAPP1Q9UN19 280 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms