RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 HSD11B1P28845 292 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 MPGP29372 298 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CCND3P30281 292 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 AVPR2P30518 371 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 RYKP34925 604 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CYLC1P35663 651 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 ACTR1BP42025 376 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SLC1A2P43004 574 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 YAP1P46937 504 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 CARSP49589 748 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 RAB13P51153 203 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 NDST2P52849 883 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TIRAPP58753 221 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 YWHAGP61981 247 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS35-205ENST00000563984 TNNC1P63316 161 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 ELF3P78545 371 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 ACSM1Q08AH1 577 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SHBQ15464 509 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 GPR68Q15743 365 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 BAK1Q16611 211 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 NTRK2Q16620 822 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CHRFAM7AQ494W8 412 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 GXYLT1Q4G148 440 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SPANXN2Q5MJ10 180 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 MORN5Q5VZ52 161 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SLC25A25Q6KCM7 469 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 HMBOX1Q6NT76 420 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SERPINA13PQ6UXR4 307 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 KCTD9Q7L273 389 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SSX9Q7RTT3 188 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TRMT11Q7Z4G4 463 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 ANKS1BQ7Z6G8 1248 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CUZD1Q86UP6 607 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 DHX40Q8IX18 779 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 CFAP206Q8IYR0 622 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 MICU2Q8IYU8 434 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SELENOHQ8IZQ5 122 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 FAM185AQ8N0U4 392 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CLYBLQ8N0X4 340 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 ALLCQ8N6M5 410 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 PAPD5Q8NDF8 572 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 ADPRHL1Q8NDY3 354 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 AGBL3Q8NEM8 1001 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 OR2L5Q8NG80 312 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CHURC1Q8WUH1 139 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 STYXQ8WUJ0 223 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 THAP4Q8WY91 577 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 ELMO1Q92556 727 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CORO2AQ92828 525 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TMEM186Q96B77 213 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 ZNF707Q96C28 371 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 RITA1Q96K30 269 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 ZNF668Q96K58 619 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 RILPQ96NA2 401 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 PPP1R2P1Q96PQ5 205 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 FYTTD1Q96QD9 318 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 XPO6Q96QU8 1125 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 TWNKQ96RR1 684 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 LBHD1Q9BQE6 289 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 NEURL2Q9BR09 285 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TMEM79Q9BSE2 394 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 RTN4RQ9BZR6 473 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TRIM31Q9BZY9 425 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TOLLIPQ9H0E2 274 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 DNTTIP1Q9H147 329 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CHST8Q9H2A9 424 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 GANQ9H2C0 597 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TAF1DQ9H5J8 278 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 NMUR1Q9HB89 426 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TLR8Q9NR97 1041 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 SLC6A13Q9NSD5 602 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TREX1Q9NSU2 369 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 FAM212BQ9NTI7 297 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 ZCCHC3Q9NUD5 404 aaKnown RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 DLGAP2Q9P1A6 1054 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 KLHL8Q9P2G9 620 aaPredicted RBP4.87□□□□□ -1.63
VPS35-205ENST00000563984 NAGKQ9UJ70 344 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 BTBD3Q9Y2F9 522 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CPQQ9Y646 472 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SLC22A7Q9Y694 548 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 NFS1Q9Y697 457 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 TEX264Q9Y6I9 313 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 CLUHO75153 1309 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 ANKRD30BQ9BXX2 1392 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 SYNJ2O15056 1496 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 FGD5Q6ZNL6 1462 aa4.87□□□□□ -1.63
VPS35-205ENST00000563984 A0A087WZY1 265 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 A0A0G2JLW4 131 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 A0A1B0GVL5 298 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 A0A1W2PPC4 97 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 A0A1W2PRG6 482 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ILVBLA1L0T0 632 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 CCRL2O00421 344 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 FCHO1O14526 889 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 HNRNPDLO14979 420 aaKnown RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 ADAMDEC1O15204 470 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 ACOX3O15254 700 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 PSMD10O75832 226 aa4.86□□□□□ -1.63
VPS35-205ENST00000563984 RSL1D1O76021 490 aaKnown RBP4.86□□□□□ -1.63
VPS35-205ENST00000563984 PDE9AO76083 593 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms