RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 RAB33AQ14088 237 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 MED22Q15528 200 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 CLLU1Q5K131 121 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ADGRF1Q5T601 910 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 GPR153Q6NV75 609 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ZDHHC21Q8IVQ6 265 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 PHACTR4Q8IZ21 702 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 DNAJC22Q8N4W6 341 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 AADATQ8N5Z0 425 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 TTC16Q8NEE8 873 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 OR6C4Q8NGE1 309 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 OR6M1Q8NGM8 313 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 WDR48Q8TAF3 677 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 NXPE3Q969Y0 559 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 AP2M1Q96CW1 435 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 TSPAN17Q96FV3 270 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 TRIB3Q96RU7 358 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 C12orf57Q99622 126 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ZNF416Q9BWM5 594 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 SIRT5Q9NXA8 310 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 TAS2R7Q9NYW3 318 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 KIF17Q9P2E2 1029 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 CMAHPQ9Y471 501 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 PCDHGA6Q9Y5G7 932 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 CLCA1A8K7I4 914 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 KDELR3O43731 214 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 VPS26AO75436 327 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 CREG1O75629 220 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 TPOP07202 933 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 CTSAP10619 480 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 ACVR1Q04771 509 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 IKZF1Q13422 519 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 PWP1Q13610 501 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 CDH18Q13634 790 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 ELOAQ14241 798 aaKnown RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 ANGPT1Q15389 498 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 PYDC2Q56P42 97 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 ATG16L2Q8NAA4 619 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SLC37A3Q8NCC5 494 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 CEP76Q8TAP6 659 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SP7Q8TDD2 431 aaPredicted RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 PHF21AQ96BD5 680 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 GABARAPL1Q9H0R8 117 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 BRD7Q9NPI1 651 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 TNPO3Q9Y5L0 923 aaKnown RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 FABP12A6NFH5 140 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 VPS4BO75351 444 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 RPP40O75818 363 aaKnown RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 CXCL14O95715 111 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 GLP2RO95838 553 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 EPOP01588 193 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 ADRA2AP08913 450 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 POU1F1P28069 291 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SSTR2P30874 369 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 MAP2K3P46734 347 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 AKR1D1P51857 326 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 NPRL3Q12980 569 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 GRIK2Q13002 908 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 WSCD2Q2TBF2 565 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 RNF219Q5W0B1 726 aaPredicted RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 RETSATQ6NUM9 610 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 LINGO4Q6UY18 593 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SNX20Q7Z614 316 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 STX19Q8N4C7 294 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 DCBLD1Q8N8Z6 715 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 OR11H4Q8NGC9 324 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 OR8J3Q8NGG0 315 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SLC22A8Q8TCC7 542 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 TRMT2BQ96GJ1 504 aaKnown RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 SMIM14Q96QK8 99 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SLC22A12Q96S37 553 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SECISBP2Q96T21 854 aaKnown RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 KLF16Q9BXK1 252 aaPredicted RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 SHARPINQ9H0F6 387 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 RAD18Q9NS91 495 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SPATA6Q9NWH7 488 aaPredicted RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 ZIM2Q9NZV7 527 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 SPASTQ9UBP0 616 aa12.76□□□□□ -0.37
CLK3-206ENST00000562078 NDRG2Q9UN36 371 aaKnown RBP12.76□□□□□ -0.37
CLK3-206ENST00000562078 HELZP42694 1942 aaKnown RBP12.75□□□□□ -0.37
CLK3-206ENST00000562078 KHNYNO15037 678 aaKnown RBP12.75□□□□□ -0.37
CLK3-206ENST00000562078 CD3EAPO15446 510 aaKnown RBP12.75□□□□□ -0.37
CLK3-206ENST00000562078 OR5F1O95221 314 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 CNPP09543 421 aaKnown RBP12.75□□□□□ -0.37
CLK3-206ENST00000562078 TSPAN19P0C672 248 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 PRSS56P0CW18 603 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 NFKB2Q00653 900 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 MXD1Q05195 221 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 ST3GAL4Q11206 333 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 SSX1Q16384 188 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 KLHL12Q53G59 568 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 CXorf57Q6NSI4 855 aaKnown RBP12.75□□□□□ -0.37
CLK3-206ENST00000562078 GCNT7Q6ZNI0 430 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 CHST9Q7L1S5 443 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 C10orf111Q8N326 155 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 SLC9A6Q92581 669 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 DIRAS2Q96HU8 199 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 RADILQ96JH8 1075 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 COL21A1Q96P44 957 aa12.75□□□□□ -0.37
CLK3-206ENST00000562078 WDFY2Q96P53 400 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms