RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PRKD3O94806 890 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 RAB28P51157 221 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 BLKP51451 505 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 MYBPC1Q00872 1141 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 C2orf80Q0P641 193 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 KRT33BQ14525 404 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 VMACQ2NL98 169 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 FAM71E1Q6IPT2 247 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 KRT80Q6KB66 452 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 VN1R5Q7Z5H4 357 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 SLC9B2Q86UD5 537 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 C10orf111Q8N326 155 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 OR4K1Q8NGD4 311 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 TRAPPC9Q96Q05 1148 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 ERVMER34-1Q9H9K5 563 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 TPT1P8Q9HAU6 139 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 IMP3Q9NV31 184 aaKnown RBP16.98■□□□□ 0.31
SNX1-208ENST00000559844 SMPD3Q9NY59 655 aaPredicted RBP16.98■□□□□ 0.31
SNX1-208ENST00000559844 NCDNQ9UBB6 729 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 PCDHGB4Q9UN71 923 aa16.98■□□□□ 0.31
SNX1-208ENST00000559844 SAP18O00422 153 aaKnown RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 ARHGAP33O14559 1287 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 YY2O15391 372 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 FURINP09958 794 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 MERTKQ12866 999 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 SLC14A1Q13336 389 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 KHDRBS2Q5VWX1 349 aaKnown RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 ZCCHC8Q6NZY4 707 aaKnown RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 ZZZ3Q8IYH5 903 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 OR4A15Q8NGL6 344 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 OR2L8Q8NGY9 312 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 GOT1L1Q8NHS2 421 aaPredicted RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 SDCCAG3Q96C92 435 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 PYURFQ96I23 114 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 QRFPRQ96P65 431 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 ELF4Q99607 663 aaPredicted RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 ADI1Q9BV57 179 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 TMEM168Q9H0V1 697 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 NTN4Q9HB63 628 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 PNPLA3Q9NST1 481 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 PADI4Q9UM07 663 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 EXO1Q9UQ84 846 aaKnown RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 PLEKHM1Q9Y4G2 1056 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 HEBP2Q9Y5Z4 205 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 C1orf226A1L170 272 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 PDZK1P1A8MUH7 402 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 KCNK5O95279 499 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 CST1P01037 141 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 KLK1P06870 262 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 SYPP08247 313 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 DDX5P17844 614 aaKnown RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 PKLRP30613 574 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 ARRB1P49407 418 aaPredicted RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 VEZF1Q14119 521 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 HLA-BQ31612 363 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 UAP1L1Q3KQV9 507 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 DEPDC1Q5TB30 811 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 PAGE2Q7Z2X7 111 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 SVOPLQ8N434 492 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 FAM86B1Q8N7N1 296 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 MS4A8Q9BY19 250 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 MRPS26Q9BYN8 205 aaKnown RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 CUEDC1Q9NWM3 386 aaPredicted RBP16.97■□□□□ 0.31
SNX1-208ENST00000559844 RPS6KA6Q9UK32 745 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 AP1M2Q9Y6Q5 423 aa16.97■□□□□ 0.31
SNX1-208ENST00000559844 PCM1Q15154 2024 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 DLGAP1O14490 977 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 SDC3O75056 442 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 ABCB1P08183 1280 aaPredicted RBP16.96■□□□□ 0.31
SNX1-208ENST00000559844 CTSEP14091 401 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 TAS2R50P59544 299 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 SPEM2Q0P670 501 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 GK3PQ14409 553 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 PRRT3Q5FWE3 981 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 ZNF551Q7Z340 670 aaPredicted RBP16.96■□□□□ 0.31
SNX1-208ENST00000559844 TRIML2Q8N7C3 387 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 LINC01555Q8NAE3 123 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 CCL4L1Q8NHW4 92 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 ZFP90Q8TF47 636 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 TMBIM1Q969X1 311 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 LRRC61Q9BV99 259 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 GTPBP2Q9BX10 602 aaKnown RBP16.96■□□□□ 0.31
SNX1-208ENST00000559844 GAREM1Q9H706 876 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 TRNAU1APQ9NX07 287 aaKnown RBP16.96■□□□□ 0.31
SNX1-208ENST00000559844 SPASTQ9UBP0 616 aa16.96■□□□□ 0.31
SNX1-208ENST00000559844 UPK1AO00322 258 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 GNGT2O14610 69 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 HPRP00739 348 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 SMIM18P0DKX4 95 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 GSTM5P46439 218 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 HNRNPKP61978 463 aaKnown RBP eCLIP16.95■□□□□ 0.37e-7■■■■□ 26.4
SNX1-208ENST00000559844 PRDX1Q06830 199 aaKnown RBP16.95■□□□□ 0.3
SNX1-208ENST00000559844 C1orf61Q13536 156 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 MYBPC3Q14896 1274 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 CLCA4Q14CN2 919 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 NKG7Q16617 165 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 SLC36A3Q495N2 470 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 ZNF385BQ569K4 471 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 CCNYL2Q5T2Q4 361 aa16.95■□□□□ 0.3
SNX1-208ENST00000559844 ZCCHC7Q8N3Z6 543 aaKnown RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms