RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ACBD4Q8NC06 268 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 FLVCR1-AS1Q8TAF5 88 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 AGR3Q8TD06 166 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 MCUR1Q96AQ8 359 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 CMTM5Q96DZ9 223 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 PDLIM5Q96HC4 596 aaKnown RBP11.87□□□□□ -0.51
SHMT2-230ENST00000557427 FOPNLQ96NB1 174 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 GBP5Q96PP8 586 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 OR52B2Q96RD2 323 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 ZNF385DQ9H6B1 395 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 ATP13A2Q9NQ11 1180 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 PCM1Q15154 2024 aa11.87□□□□□ -0.51
SHMT2-230ENST00000557427 CACNA1CQ13936 2221 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 A0A0J9YY10 115 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 FAM221AA4D161 298 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 STX16-NPEPL1H3BU86 382 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 PEX12O00623 359 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 SDHDO14521 159 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 STX16O14662 325 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 ZNF749O43361 778 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 HCRTR1O43613 425 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 WISP2O76076 250 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 C1orf105O95561 183 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 CTSBP07858 339 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 UMODP07911 640 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 MTHFD2P13995 350 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 NCF2P19878 526 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 PKLRP30613 574 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 GRIA3P42263 894 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 CA7P43166 264 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 RAP1GDS1P52306 607 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 IL2P60568 153 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 KLF10Q13118 480 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 KIR2DS3Q14952 304 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 HERC3Q15034 1050 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 TLR1Q15399 786 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 SF1Q15637 639 aaKnown RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 DEFB110Q30KQ9 67 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 ACSBG2Q5FVE4 666 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 FCRL6Q6DN72 434 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 RPUSD3Q6P087 351 aaKnown RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 DCUN1D3Q8IWE4 304 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 PTGR2Q8N8N7 351 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 C19orf47Q8N9M1 422 aaKnown RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 LINC01555Q8NAE3 123 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 RBM15BQ8NDT2 890 aaKnown RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 CD200R1Q8TD46 325 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 ACTRT2Q8TDY3 377 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 RAD51AP1Q96B01 352 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 MTFMTQ96DP5 389 aaKnown RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 PHF21BQ96EK2 531 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 C1QTNF3Q9BXJ4 246 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 NUF2Q9BZD4 464 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 IRAK4Q9NWZ3 460 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 SH3BGRL2Q9UJC5 107 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 DHRS7Q9Y394 339 aa11.86□□□□□ -0.51
SHMT2-230ENST00000557427 PTRH2Q9Y3E5 179 aaKnown RBP11.86□□□□□ -0.51
SHMT2-230ENST00000557427 E7EQ34 232 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 E9PBE3 544 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 UBXN8O00124 270 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 OR2B3O76000 313 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 SUPT7LO94864 414 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 TSPAN12O95859 305 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 IGHEP01854 428 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 FGF4P08620 206 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 CBSLP0DN79 551 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 CBSP35520 551 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 CPOXP36551 454 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 PGM1P36871 562 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 CPA2P48052 419 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 CLCN7P51798 805 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 PDCD2Q16342 344 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-230ENST00000557427 SLC5A12Q1EHB4 618 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 MLIPQ5VWP3 458 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 GFRALQ6UXV0 394 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 TGIF2LYQ8IUE0 185 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 GPR135Q8IZ08 494 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 OR2L8Q8NGY9 312 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 CEP70Q8NHQ1 597 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 CHTF18Q8WVB6 975 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 NR4A3Q92570 626 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 SLC30A3Q99726 388 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 SPOCK3Q9BQ16 436 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 MENTQ9BUN1 341 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 ENKD1Q9H0I2 346 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 WDR55Q9H6Y2 383 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-230ENST00000557427 MEAF6Q9HAF1 191 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 RNF112Q9ULX5 631 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 PADI2Q9Y2J8 665 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 TRAF6Q9Y4K3 522 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 PCDHGB6Q9Y5F9 930 aa11.85□□□□□ -0.51
SHMT2-230ENST00000557427 TMEM200CA6NKL6 621 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 SUPT3HB4E1H0 165 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 C9J4A7 227 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 PEX11AO75192 247 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 SUPT3HO75486 399 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 RPS17P08708 135 aaKnown RBP11.84□□□□□ -0.51
SHMT2-230ENST00000557427 COX4I1P13073 169 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 GFAPP14136 432 aa11.84□□□□□ -0.51
SHMT2-230ENST00000557427 EZRP15311 586 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms