RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.47□□□□□ -1.05
TDP1-210ENST00000554976 ZCCHC7Q8N3Z6 543 aaKnown RBP8.47□□□□□ -1.05
TDP1-210ENST00000554976 MARVELD2Q8N4S9 558 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 OR4E2Q8NGC2 313 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 KLHL6Q8WZ60 621 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 RGMAQ96B86 450 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 TEX10Q9NXF1 929 aaPredicted RBP8.47□□□□□ -1.05
TDP1-210ENST00000554976 CES1P1Q9UKY3 287 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 ARHGEF17Q96PE2 2063 aaPredicted RBP8.47□□□□□ -1.05
TDP1-210ENST00000554976 F5P12259 2224 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 C6orf47O95873 294 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 CSF2P04141 144 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 TDGF1P13385 188 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 CMPK1P30085 196 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 C2orf80Q0P641 193 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 UGT2A3Q6UWM9 527 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 AMIGO2Q86SJ2 522 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 PARGQ86W56 976 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 NUDT13Q86X67 352 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 CLEC4FQ8N1N0 589 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 SPEM1Q8N4L4 309 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 PACRGLQ8N7B6 248 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 MFSD2AQ8NA29 543 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 TBC1D20Q96BZ9 403 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 NSMCE2Q96MF7 247 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 OR2A5Q96R48 311 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 NR1H4Q96RI1 486 aaPredicted RBP8.47□□□□□ -1.05
TDP1-210ENST00000554976 CENPKQ9BS16 269 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 THUMPD3Q9BV44 507 aaKnown RBP8.47□□□□□ -1.05
TDP1-210ENST00000554976 TPT1P8Q9HAU6 139 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 GALNT8Q9NY28 637 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 ZNF282Q9UDV7 671 aaPredicted RBP8.47□□□□□ -1.05
TDP1-210ENST00000554976 PCDHGB4Q9UN71 923 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 PCDHGB5Q9Y5G0 923 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 NUP210LQ5VU65 1888 aa8.47□□□□□ -1.05
TDP1-210ENST00000554976 KIR2DS5A0A0G2JLQ3 304 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 A0A0G2JNG1 304 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 ISM1B1AKI9 464 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 KIR2DS3K7RE56 304 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 KDM1AO60341 852 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 CTSVO60911 334 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 RAP2AP10114 183 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 EFNA1P20827 205 aaPredicted RBP8.46□□□□□ -1.05
TDP1-210ENST00000554976 VEZF1Q14119 521 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 SIM2Q14190 667 aaPredicted RBP8.46□□□□□ -1.05
TDP1-210ENST00000554976 KIR2DS5Q14953 304 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 VMACQ2NL98 169 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 NHSL2Q5HYW2 709 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 COX20Q5RI15 118 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 CCNYL2Q5T2Q4 361 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 SAXO2Q658L1 398 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 MAMSTRQ6ZN01 415 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 RD3Q7Z3Z2 195 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 DCP2Q8IU60 420 aaKnown RBP8.46□□□□□ -1.05
TDP1-210ENST00000554976 CHERPQ8IWX8 916 aaKnown RBP8.46□□□□□ -1.05
TDP1-210ENST00000554976 SIX5Q8N196 739 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 CAMKK1Q8N5S9 505 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 OR4A15Q8NGL6 344 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 SLC37A2Q8TED4 501 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 LCN9Q8WX39 176 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 CENPNQ96H22 339 aaPredicted RBP8.46□□□□□ -1.05
TDP1-210ENST00000554976 GSDMCQ9BYG8 508 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 C1GALT1Q9NS00 363 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 UBAP1Q9NZ09 502 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 CPNE7Q9UBL6 633 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 KLHL20Q9Y2M5 609 aa8.46□□□□□ -1.05
TDP1-210ENST00000554976 MRPS17Q9Y2R5 130 aaKnown RBP8.46□□□□□ -1.05
TDP1-210ENST00000554976 COL5A1P20908 1838 aaPredicted RBP8.46□□□□□ -1.06
TDP1-210ENST00000554976 ARHGAP10A1A4S6 786 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 P2RX6O15547 441 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 MAP3K13O43283 966 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 EPN2O95208 641 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 RASAL1O95294 804 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 NUDT7P0C024 238 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 NME1P15531 152 aaKnown RBP8.46□□□□□ -1.06
TDP1-210ENST00000554976 PCGF2P35227 344 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 MAPK11Q15759 364 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 OR2L5Q8NG80 312 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 RSC1A1Q92681 617 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 PPP1R14BQ96C90 147 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 PPCDCQ96CD2 204 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 NELL2Q99435 816 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 RSPO3Q9BXY4 272 aaPredicted RBP8.46□□□□□ -1.06
TDP1-210ENST00000554976 TMEM38AQ9H6F2 299 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 CXorf36Q9H7Y0 433 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 UCK1Q9HA47 277 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 TBC1D17Q9HA65 648 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 ATAD3AQ9NVI7 634 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 ACTR10Q9NZ32 417 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 AHSPQ9NZD4 102 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 VPS4AQ9UN37 437 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 SNX7Q9UNH6 387 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 VILLO15195 856 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 FKBP9O95302 570 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 FCGR1AP12314 374 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 RPS15AP62244 130 aaKnown RBP8.46□□□□□ -1.06
TDP1-210ENST00000554976 FOLH1Q04609 750 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 UBXN2BQ14CS0 331 aa8.46□□□□□ -1.06
TDP1-210ENST00000554976 SKIV2LQ15477 1246 aaKnown RBP8.46□□□□□ -1.06
TDP1-210ENST00000554976 TBPL2Q6SJ96 375 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms