RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 LGR4Q9BXB1 951 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 DPY30Q9C005 99 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 ZCCHC2Q9C0B9 1178 aaKnown RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 YIPF3Q9GZM5 350 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 ABCG8Q9H221 673 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 RMND5AQ9H871 391 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 CUEDC1Q9NWM3 386 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 MAP10Q9P2G4 905 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 GALPQ9UBC7 116 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 ZNF225Q9UK10 706 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 SUFUQ9UMX1 484 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PCDHB3Q9Y5E6 796 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PTGDR2Q9Y5Y4 395 aa10.65□□□□□ -0.7
SHMT2-216ENST00000554975 MDC1Q14676 2089 aaKnown RBP10.65□□□□□ -0.7
SHMT2-216ENST00000554975 PDZD2O15018 2839 aa10.65□□□□□ -0.71
SHMT2-216ENST00000554975 ARHGAP10A1A4S6 786 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 SERTM1A2A2V5 107 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 WIPF3A6NGB9 483 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TTLL8A6PVC2 850 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 RHPN2P1A8MT19 583 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 B4E171 279 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 PPP6CO00743 305 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 OR7A17O14581 309 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 PRMT3O60678 531 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ULK1O75385 1050 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 DEAF1O75398 565 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CLPTM1O96005 669 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 FUCA1P04066 466 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 GSTM1P09488 218 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ZCCHC18P0CG32 403 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CDH1P12830 882 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TCN2P20062 427 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ELAVL4P26378 380 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 AK4P27144 223 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CSTF2P33240 577 aaKnown RBP eCLIP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TRIM23P36406 574 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TSPAN7P41732 249 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 RPL5P46777 297 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 GSTM4Q03013 218 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 PTSQ03393 145 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 LIPEQ05469 1076 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 EPS8Q12929 822 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TRA2AQ13595 282 aaKnown RBP eCLIP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 BOP1Q14137 746 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TLR1Q15399 786 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 EIF2S3LQ2VIR3 472 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 PRR30Q53SZ7 412 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 LDLRAP1Q5SW96 308 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 DCAF12Q5T6F0 453 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CYP2R1Q6VVX0 501 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CHERPQ8IWX8 916 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ALDH16A1Q8IZ83 802 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TRAM1L1Q8N609 369 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 PAPD5Q8NDF8 572 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 DDHD1Q8NEL9 900 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 TRPV3Q8NET8 790 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 OR4D9Q8NGE8 314 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 OR2T11Q8NH01 316 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 HM13Q8TCT9 377 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 LKAAEAR1Q8TD35 194 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ZDHHC1Q8WTX9 485 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 SCAMP4Q969E2 229 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 KIAA1143Q96AT1 154 aaPredicted RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 SDCCAG3Q96C92 435 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 EID2BQ96D98 161 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CGREF1Q99674 301 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 BDH2Q9BUT1 245 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 C1orf50Q9BV19 199 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 RIOK2Q9BVS4 552 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ANKRD60Q9BZ19 345 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 PCDHAC1Q9H158 963 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ACTR8Q9H981 624 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CARS2Q9HA77 564 aaKnown RBP10.64□□□□□ -0.71
SHMT2-216ENST00000554975 PARVBQ9HBI1 364 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 LRTM1Q9HBL6 345 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 SLC52A3Q9NQ40 469 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 AGPAT4Q9NRZ5 378 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 C1orf109Q9NX04 203 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 CMTM6Q9NX76 183 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 ARL15Q9NXU5 204 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 AURKCQ9UQB9 309 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 COMMD3-BMI1R4GMX3 469 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 HIVEP1P15822 2718 aa10.64□□□□□ -0.71
SHMT2-216ENST00000554975 IGHV1OR21-1A0A087WYE8 117 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 PRSS38A1L453 326 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 IQCF5A8MTL0 148 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 MKRN2OSH3BPM6 223 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 MANBAO00462 879 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 TNFRSF10CO14798 259 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 PPM1DO15297 605 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 INPP4BO15327 924 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 ERN1O75460 977 aaKnown RBP10.63□□□□□ -0.71
SHMT2-216ENST00000554975 DNAJB5O75953 348 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 GUCA1CO95843 209 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 LDLRP01130 860 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 HOXC4P09017 264 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-216ENST00000554975 HSD3B1P14060 373 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 CD1EP15812 388 aa10.63□□□□□ -0.71
SHMT2-216ENST00000554975 ZNF26P17031 533 aaPredicted RBP10.63□□□□□ -0.71
SHMT2-216ENST00000554975 PAX7P23759 505 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms