RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 SLC22A11Q9NSA0 550 aa11.81□□□□□ -0.52
SHMT2-214ENST00000554604 NDE1Q9NXR1 346 aa11.81□□□□□ -0.52
SHMT2-214ENST00000554604 NXT1Q9UKK6 140 aaKnown RBP11.81□□□□□ -0.52
SHMT2-214ENST00000554604 PCTPQ9UKL6 214 aa11.81□□□□□ -0.52
SHMT2-214ENST00000554604 ZNF451Q9Y4E5 1061 aa11.81□□□□□ -0.52
SHMT2-214ENST00000554604 COPG1Q9Y678 874 aaKnown RBP11.81□□□□□ -0.52
SHMT2-214ENST00000554604 MAU2Q9Y6X3 613 aa11.81□□□□□ -0.52
SHMT2-214ENST00000554604 PTPN13Q12923 2485 aa11.81□□□□□ -0.52
SHMT2-214ENST00000554604 SCN2AQ99250 2005 aa11.81□□□□□ -0.52
SHMT2-214ENST00000554604 PCSK5Q92824 1860 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 ESPL1Q14674 2120 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 A0A088AWK7 358 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 IGKV1-8A0A0C4DH67 115 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CCNT2O60583 730 aaKnown RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CEACAM4O75871 244 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 UMODP07911 640 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 HIST1H2AGP0C0S8 130 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 HIST1H2ADP20671 130 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 ITGAXP20702 1163 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 IMPA1P29218 277 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CDH13P55290 713 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 FOXL2P58012 376 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 SLC25A3Q00325 362 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 OCA2Q04671 838 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 SP140Q13342 867 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CUL3Q13618 768 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 RAPSNQ13702 412 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CYLC2Q14093 348 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 KPNB1Q14974 876 aaKnown RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PCBP2Q15366 365 aaKnown RBP eCLIP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 TGFBIQ15582 683 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 NKG7Q16617 165 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 DCAF10Q5QP82 559 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PRMT9Q6P2P2 845 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PGM2L1Q6PCE3 622 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 C16orf89Q6UX73 402 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 SHISA6Q6ZSJ9 500 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 LARP4Q71RC2 724 aaKnown RBP eCLIP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PAQR7Q86WK9 346 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 SNX32Q86XE0 403 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CSNK1A1LQ8N752 337 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PDPRQ8NCN5 879 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 FDCSPQ8NFU4 85 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 HIST1H2AHQ96KK5 128 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CCDC138Q96M89 665 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 HIST1H2AJQ99878 128 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 H2AFJQ9BTM1 129 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 TRIM54Q9BYV2 358 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PCBD2Q9H0N5 130 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 SLC26A1Q9H2B4 701 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 ZNF304Q9HCX3 659 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 ENAMQ9NRM1 1142 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 P4HTMQ9NXG6 502 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 NOP53Q9NZM5 478 aaKnown RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CD274Q9NZQ7 290 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 STOX2Q9P2F5 926 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CTSFQ9UBX1 484 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 SLC7A8Q9UHI5 535 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 ADAMTS6Q9UKP5 1117 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PRPF19Q9UMS4 504 aaKnown RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 CDC14AQ9UNH5 594 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PDE10AQ9Y233 779 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 FIS1Q9Y3D6 152 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 PCDHGB7Q9Y5F8 929 aa11.8□□□□□ -0.52
SHMT2-214ENST00000554604 TNPO3Q9Y5L0 923 aaKnown RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.8□□□□□ -0.52
SHMT2-214ENST00000554604 LOC100653049A0A140TA62 436 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 LRRC14BA6NHZ5 514 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 TTLL8A6PVC2 850 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 H7BY64 318 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 TXNDC9O14530 226 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 UBDO15205 165 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 SLC16A5O15375 505 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 DPM1O60762 260 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 VPS4BO75351 444 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 ENTPD5O75356 428 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 KRT34O76011 436 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 ESRRBO95718 433 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 ONECUT2O95948 504 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 S100BP04271 92 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-214ENST00000554604 ALPPP05187 535 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 TSPAN8P19075 237 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 FBLP22087 321 aaKnown RBP11.79□□□□□ -0.52
SHMT2-214ENST00000554604 MMP11P24347 488 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 HRH2P25021 359 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 PKNOX1P55347 436 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 TBPL1P62380 186 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 IGFBP7Q16270 282 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 WLSQ5T9L3 541 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 PRAMEF13Q5VWM6 474 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 TMEM198Q66K66 360 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 CLEC6AQ6EIG7 209 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 ZNF425Q6IV72 752 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 METTL2BQ6P1Q9 378 aaKnown RBP11.79□□□□□ -0.52
SHMT2-214ENST00000554604 SBSNQ6UWP8 590 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 FRA10AC1Q70Z53 315 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 COX15Q7KZN9 410 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 PPP1R32Q7Z5V6 425 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 HPS6Q86YV9 775 aa11.79□□□□□ -0.52
SHMT2-214ENST00000554604 HOMEZQ8IX15 550 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms