RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.77□□□□□ -0.21
SHMT2-208ENST00000553868 MFSD9Q8NBP5 474 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 ZNF740Q8NDX6 193 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 RP9Q8TA86 221 aaKnown RBP13.77□□□□□ -0.21
SHMT2-208ENST00000553868 FLVCR1-AS1Q8TAF5 88 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 AHCYL2Q96HN2 611 aaKnown RBP13.77□□□□□ -0.21
SHMT2-208ENST00000553868 CD180Q99467 661 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 ZBTB18Q99592 522 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 BRINP2Q9C0B6 783 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 RAB33BQ9H082 229 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 SPNS1Q9H2V7 528 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 SEMA6CQ9H3T2 930 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 ZIM2Q9NZV7 527 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 GIMAP2Q9UG22 337 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 MAPRE3Q9UPY8 281 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 TP53TG5Q9Y2B4 290 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 GPR45Q9Y5Y3 372 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 AP1M2Q9Y6Q5 423 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 RNF215Q9Y6U7 377 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 HIVEP1P15822 2718 aa13.77□□□□□ -0.21
SHMT2-208ENST00000553868 FEZF1A0PJY2 475 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 OR2A25A4D2G3 310 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 MAP3K7O43318 606 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 DUX1O43812 170 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 UNC5CO95185 931 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 PRKAR1AP10644 381 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 PNLIPP16233 465 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 CCKBRP32239 447 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 YBX1P67809 324 aaKnown RBP13.76□□□□□ -0.21
SHMT2-208ENST00000553868 CYLC2Q14093 348 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-208ENST00000553868 NR1D2Q14995 579 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 KRTAP21-3Q3LHN1 58 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 TMEM35AQ53FP2 167 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 AGKQ53H12 422 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 TREML1Q86YW5 311 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 CARFQ8N187 725 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 TSPEARQ8WU66 669 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 RSC1A1Q92681 617 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 NKD1Q969G9 470 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 PMEPA1Q969W9 287 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 ZDHHC12Q96GR4 267 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 QRFPRQ96P65 431 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 C1orf50Q9BV19 199 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 ARL8BQ9NVJ2 186 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.76□□□□□ -0.216e-6■■□□□ 12.1
SHMT2-208ENST00000553868 EPHA6Q9UF33 1036 aa13.76□□□□□ -0.21
SHMT2-208ENST00000553868 POLR3HQ9Y535 204 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-208ENST00000553868 APCP25054 2843 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 DYTNA2CJ06 578 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 HAT1O14929 419 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 SLC22A3O75751 556 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 CBX6O95503 412 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 TGFB1P01137 390 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 COX4I1P13073 169 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 PRF1P14222 555 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 MAGP20916 626 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 CDH3P22223 829 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 GPX3P22352 226 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 BCL6P41182 706 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 RAP1GDS1P52306 607 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 ARFIP1P53367 373 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 DIO3P55073 304 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 RGS1Q08116 209 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 TGM3Q08188 693 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 STX5Q13190 355 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 KIAA0040Q15053 153 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 DEPDC1Q5TB30 811 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 KHDRBS2Q5VWX1 349 aaKnown RBP13.75□□□□□ -0.21
SHMT2-208ENST00000553868 NOXRED1Q6NXP6 359 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 IRGCQ6NXR0 463 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 CYP20A1Q6UW02 462 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 PAGE2Q7Z2X7 111 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 TRIM73Q86UV7 250 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 FAM20CQ8IXL6 584 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 ZNF655Q8N720 491 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-208ENST00000553868 ANKRD53Q8N9V6 530 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 SRFBP1Q8NEF9 429 aaKnown RBP13.75□□□□□ -0.21
SHMT2-208ENST00000553868 CHTF18Q8WVB6 975 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 STARD8Q92502 1023 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 APIPQ96GX9 242 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 FCRL1Q96LA6 429 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 TMEM74Q96NL1 305 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 SLC25A23Q9BV35 468 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 MS4A8Q9BY19 250 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 ZMYND15Q9H091 742 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 C1GALT1Q9NS00 363 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 SIRT5Q9NXA8 310 aa13.75□□□□□ -0.21
SHMT2-208ENST00000553868 MTORP42345 2549 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 BBIP1A8MTZ0 92 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 TMX2-CTNND1H3BSU7 103 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 PRMT3O60678 531 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 SERPIND1P05546 499 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 SNRPB2P08579 225 aaKnown RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 SLC35G6P0C7Q6 338 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 G6PDP11413 515 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 BCKDHAP12694 445 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 ALDH4A1P30038 563 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 ASMTP46597 345 aa13.74□□□□□ -0.21
SHMT2-208ENST00000553868 CLNS1AP54105 237 aaKnown RBP13.74□□□□□ -0.21
SHMT2-208ENST00000553868 KCNK10P57789 538 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms