RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ZSCAN5AQ9BUG6 496 aa5.24□□□□□ -1.57
SCFD1-208ENST00000553278 FUNDC2Q9BWH2 189 aa5.24□□□□□ -1.57
SCFD1-208ENST00000553278 NUSAP1Q9BXS6 441 aaKnown RBP5.24□□□□□ -1.57
SCFD1-208ENST00000553278 PUS3Q9BZE2 481 aaKnown RBP5.24□□□□□ -1.57
SCFD1-208ENST00000553278 CPVLQ9H3G5 476 aa5.24□□□□□ -1.57
SCFD1-208ENST00000553278 ZBTB20Q9HC78 741 aaPredicted RBP5.24□□□□□ -1.57
SCFD1-208ENST00000553278 ECHDC1Q9NTX5 307 aa5.24□□□□□ -1.57
SCFD1-208ENST00000553278 BCAP29Q9UHQ4 241 aa5.24□□□□□ -1.57
SCFD1-208ENST00000553278 MRTO4Q9UKD2 239 aaKnown RBP5.24□□□□□ -1.57
SCFD1-208ENST00000553278 PILRAQ9UKJ1 303 aa5.24□□□□□ -1.57
SCFD1-208ENST00000553278 PCDHA7Q9UN72 937 aa5.24□□□□□ -1.57
SCFD1-208ENST00000553278 C15orf38-AP3S2A0A0A6YYH1 394 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 TRBV5-5A0A0J9YX44 114 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 A0A0U1RQV5 110 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ATP6AP2A0A1C7CYW4 349 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ASPDHA6ND91 283 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 AKAP8O43823 692 aaKnown RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 CSDE1O75534 798 aaKnown RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 MT-ND2P03891 347 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ATP1B1P05026 303 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ASNSP08243 561 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ZCCHC18P0CG32 403 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 FGF5P12034 268 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 MSH3P20585 1137 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 FCGR2BP31994 310 aaPredicted RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 OR1D2P34982 312 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 SLC6A8P48029 635 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 DNA2P51530 1060 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 HERV-K104P61576 105 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 TUBA1BP68363 451 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 SSBP2P81877 361 aaPredicted RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ZBTB17Q13105 803 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 GPR50Q13585 617 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 RBM39Q14498 530 aaKnown RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 TWIST1Q15672 202 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 MPPE1Q53F39 396 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 PDLIM3Q53GG5 364 aaPredicted RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 SIRPB2Q5JXA9 342 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 LYPLAL1Q5VWZ2 237 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 LRRC8BQ6P9F7 803 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 C17orf107Q6ZR85 190 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 KCTD8Q6ZWB6 473 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 G2E3Q7L622 706 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ZDHHC21Q8IVQ6 265 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ZNF441Q8N8Z8 693 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 FAM133AQ8N9E0 248 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 OR13C5Q8NGS8 318 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 OR4L1Q8NH43 312 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 OLIG1Q8TAK6 271 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 BPIFA2Q96DR5 249 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 MRPL53Q96EL3 112 aaKnown RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 LRRC1Q9BTT6 524 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 FAM49AQ9H0Q0 323 aaPredicted RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 WDR76Q9H967 626 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 LRRC40Q9H9A6 602 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 SMPD3Q9NY59 655 aaPredicted RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 PLEK2Q9NYT0 353 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 OR6C2Q9NZP2 312 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 ERVK-18Q9QC07 812 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 RABL2AQ9UBK7 228 aaPredicted RBP5.23□□□□□ -1.57
SCFD1-208ENST00000553278 FBXL4Q9UKA2 621 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 RIPK3Q9Y572 518 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 UMODL1Q5DID0 1318 aa5.23□□□□□ -1.57
SCFD1-208ENST00000553278 NPC1L1Q9UHC9 1359 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 IGLV5-45A0A087WSX0 123 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 A8MVM7 634 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 PDXKO00764 312 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 CXCL11O14625 94 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 IGHV4-39P01824 125 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 DAOP14920 347 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 ZNF12P17014 697 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 DRD5P21918 477 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 ADRA1AP35348 466 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 GDF5P43026 501 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 NR2C2P49116 596 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 GAS1P54826 345 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 TMEM132DQ14C87 1099 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 SF3B4Q15427 424 aaKnown RBP eCLIP5.22□□□□□ -1.576e-11■□□□□ 9.7
SCFD1-208ENST00000553278 PDK4Q16654 411 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 ADPRMQ3LIE5 342 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 XKR3Q5GH77 459 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 PDSS1Q5T2R2 415 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 LCN1P1Q5VSP4 162 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 CEACAM20Q6UY09 585 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 TMEM64Q6YI46 380 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 SLC24A5Q71RS6 500 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 ZCCHC7Q8N3Z6 543 aaKnown RBP5.22□□□□□ -1.57
SCFD1-208ENST00000553278 LNX1Q8TBB1 728 aaPredicted RBP5.22□□□□□ -1.57
SCFD1-208ENST00000553278 GIPC3Q8TF64 312 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 ASB5Q8WWX0 329 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 SMG7Q92540 1137 aaKnown RBP5.22□□□□□ -1.57
SCFD1-208ENST00000553278 RPL36ALQ969Q0 106 aaKnown RBP5.22□□□□□ -1.57
SCFD1-208ENST00000553278 PINX1Q96BK5 328 aaKnown RBP5.22□□□□□ -1.57
SCFD1-208ENST00000553278 NXPE2Q96DL1 559 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 ADGRG7Q96K78 797 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 CCT7Q99832 543 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 CCM2Q9BSQ5 444 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 IL25Q9H293 177 aa5.22□□□□□ -1.57
SCFD1-208ENST00000553278 UPF2Q9HAU5 1272 aaKnown RBP5.22□□□□□ -1.57
SCFD1-208ENST00000553278 TBC1D13Q9NVG8 400 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms