RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 OAS3Q9Y6K5 1087 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TRAV6A0A075B6T7 132 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SNTNA6NMZ2 147 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FAM47E-STBD1D6RA91 191 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 DLGAP1O14490 977 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CTDSP2O14595 271 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ACOT8O14734 319 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FGF10O15520 208 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 AP1G1O43747 822 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 STK16O75716 305 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 AMY2AP04746 511 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 AMY2BP19961 511 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TNFRSF1BP20333 461 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 PRKACBP22694 351 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 DGKAP23743 735 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CCNCP24863 283 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FPR2P25090 351 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 HTR1BP28222 390 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TGFBR1P36897 503 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 BCL6P41182 706 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CLCNKBP51801 687 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ITGA1P56199 1179 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 DCDC1P59894 354 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RPP38P78345 283 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 PFKPQ01813 784 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 LRP8Q14114 963 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SLC9A5Q14940 896 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 C18orf21Q32NC0 220 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FAM171A1Q5VUB5 890 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OTUD1Q5VV17 481 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CLEC20AQ6ZU45 233 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 FAM214BQ7L5A3 538 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CYP4Z1Q86W10 505 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 MMAAQ8IVH4 418 aaKnown RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SLC22A15Q8IZD6 547 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SVOPLQ8N434 492 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OR4F6Q8NGB9 312 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OR6C4Q8NGE1 309 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 OR5AK3PQ8NH89 298 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 BPIFB1Q8TDL5 484 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CHPT1Q8WUD6 406 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 XAGE5Q8WWM1 108 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ASB12Q8WXK4 309 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 ING5Q8WYH8 240 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 UBE2FQ969M7 185 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 CCDC120Q96HB5 630 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 SNX27Q96L92 541 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RANBP9Q96S59 729 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 TTYH1Q9H313 450 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 RDH8Q9NYR8 311 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 DNAJC27Q9NZQ0 273 aa5.28□□□□□ -1.56
LIMA1-203ENST00000547825 NFKBIL1Q9UBC1 381 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-203ENST00000547825 NT5C1B-RDH14C9J2C7 533 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 M0QX08 132 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CLIC1O00299 241 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 OR1I1O60431 355 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 UQCRC1P31930 480 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 HTR6P50406 440 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TLE2Q04725 743 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 EMX1Q04741 257 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 HIST2H2ACQ16777 129 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TECRLQ5HYJ1 363 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 HIST2H2AA3Q6FI13 130 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 AFTPHQ6ULP2 937 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 Q6ZPB1 254 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CHMP1BQ7LBR1 199 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TRMT11Q7Z4G4 463 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 HMGN2P46Q86SG4 172 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 MFSD6LQ8IWD5 586 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TDHQ8IZJ6 230 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CRYBG2Q8N1P7 616 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 DPP10Q8N608 796 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 NELL1Q92832 810 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 GUCD1Q96NT3 240 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ALPK1Q96QP1 1244 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 TBX5Q99593 518 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLC2A11Q9BYW1 496 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 OR51E2Q9H255 320 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 INIPQ9NRY2 104 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 DUS2Q9NX74 493 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 THUMPD1Q9NXG2 353 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 C17orf102A2RUQ5 167 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SMAD9O15198 467 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLC7A4O43246 635 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ERAL1O75616 437 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 OR2B3O76000 313 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 C22orf31O95567 290 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 DHFRP00374 187 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 SLC2A2P11168 524 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CKBP12277 381 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 ENGP17813 658 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 NNMTP40261 264 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 BUD31P41223 144 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CSRP3P50461 194 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CCL23P55773 120 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 RPS14P62263 151 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 CSTF1Q05048 431 aaKnown RBP5.27□□□□□ -1.57
LIMA1-203ENST00000547825 BCL2L1Q07817 233 aa5.27□□□□□ -1.57
LIMA1-203ENST00000547825 STX4Q12846 297 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms