RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ZNF362Q5T0B9 420 aaPredicted RBP14.39□□□□□ -0.11
USP28-214ENST00000545540 MED27Q6P2C8 311 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 PTCHD4Q6ZW05 846 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 TMC8Q8IU68 726 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 DNAJB8Q8NHS0 232 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 SLC6A16Q9GZN6 736 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 FBXO8Q9NRD0 319 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 PLXNB3Q9ULL4 1909 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 LATO43561 262 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 KIAA0513O60268 411 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 GADD45GO95257 159 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 BCHEP06276 602 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 CDK1P06493 297 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 PSMB5P28074 263 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 SFSWAPQ12872 951 aaKnown RBP14.39□□□□□ -0.11
USP28-214ENST00000545540 GCNT6Q5T4J0 391 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 DEF8Q6ZN54 512 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 ARMC8Q8IUR7 673 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 ELMOD1Q8N336 334 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 C11orf24Q96F05 449 aaPredicted RBP14.39□□□□□ -0.11
USP28-214ENST00000545540 TM7SF3Q9NS93 570 aa14.39□□□□□ -0.11
USP28-214ENST00000545540 FAM32AQ9Y421 112 aaKnown RBP14.39□□□□□ -0.11
USP28-214ENST00000545540 DNMT3AQ9Y6K1 912 aaPredicted RBP14.39□□□□□ -0.11
USP28-214ENST00000545540 HELZP42694 1942 aaKnown RBP14.38□□□□□ -0.11
USP28-214ENST00000545540 HIDE1A8MVS5 230 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 SNPHO15079 494 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 PRKRAO75569 313 aaKnown RBP14.38□□□□□ -0.11
USP28-214ENST00000545540 CXCL14O95715 111 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 IL1RNP18510 177 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 CXCR4P61073 352 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 CSTF3Q12996 717 aaKnown RBP14.38□□□□□ -0.11
USP28-214ENST00000545540 TCEAL5Q5H9L2 206 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 C6orf183Q5T699 404 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 GRHL2Q6ISB3 625 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 GPR155Q7Z3F1 870 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 BTN2A2Q8WVV5 523 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 GLYATL1Q969I3 302 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 YME1L1Q96TA2 773 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 ZNF556Q9HAH1 456 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 MIEF1Q9NQG6 463 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 ACER3Q9NUN7 267 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 IFT52Q9Y366 437 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 AGAP5A6NIR3 686 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 METTL15A6NJ78 407 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 UPK1BO75841 260 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 MPC1LP0DKB6 136 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 TNNI3P19429 210 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 ITGB8P26012 769 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 RGS6P49758 472 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 VEZF1Q14119 521 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 TAB1Q15750 504 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 MICAQ29983 383 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 C10orf62Q5T681 223 aaPredicted RBP14.38□□□□□ -0.11
USP28-214ENST00000545540 OR8H2Q8N162 312 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 VN1R2Q8NFZ6 395 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 PXYLP1Q8TE99 480 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 CAPSLQ8WWF8 208 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 VWCEQ96DN2 955 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 A0A1W2PRB8 838 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 ZW10O43264 779 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 ATG13O75143 517 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 PSIP1O75475 530 aaKnown RBP14.38□□□□□ -0.11
USP28-214ENST00000545540 KLHL18O94889 574 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 OXSR1O95747 527 aaPredicted RBP14.38□□□□□ -0.11
USP28-214ENST00000545540 CTSAP10619 480 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 OPRD1P41143 372 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 LIM2P55344 173 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 POLR2LP62875 67 aaKnown RBP14.38□□□□□ -0.11
USP28-214ENST00000545540 TMEM53Q6P2H8 277 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP28-214ENST00000545540 FAM9CQ8IZT9 166 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 C16orf78Q8WTQ4 265 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 F2RL3Q96RI0 385 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 EPYCQ99645 322 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 REEP4Q9H6H4 257 aa14.38□□□□□ -0.11
USP28-214ENST00000545540 DOCK9Q9BZ29 2069 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 TFECO14948 347 aaPredicted RBP14.37□□□□□ -0.11
USP28-214ENST00000545540 MMP20O60882 483 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ENTPD6O75354 484 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 PRPH2P23942 346 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 CHMP24386 653 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 VIPR1P32241 457 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 PRKAG1P54619 331 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ZNF763Q0D2J5 394 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 PUM1Q14671 1186 aaKnown RBP eCLIP14.37□□□□□ -0.11
USP28-214ENST00000545540 HENMT1Q5T8I9 393 aaKnown RBP14.37□□□□□ -0.11
USP28-214ENST00000545540 CEACAM20Q6UY09 585 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 GPR65Q8IYL9 337 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 SLC34A3Q8N130 599 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 METTL4Q8N3J2 472 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 EXOSC8Q96B26 276 aaKnown RBP14.37□□□□□ -0.11
USP28-214ENST00000545540 LMLNQ96KR4 655 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 CXorf36Q9H7Y0 433 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ANKRA2Q9H9E1 313 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 NMNAT1Q9HAN9 279 aaPredicted RBP14.37□□□□□ -0.11
USP28-214ENST00000545540 CCNB1IP1Q9NPC3 277 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 SLAMF7Q9NQ25 335 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 PCDHGA4Q9Y5G9 962 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 PIPSLA2A3N6 862 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 H0YIV9 168 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms