RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 ROGDIQ9GZN7 287 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 REXO4Q9GZR2 422 aaKnown RBP12.27□□□□□ -0.45
RTN3-213ENST00000543552 PRM3Q9NNZ6 103 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 SAYSD1Q9NPB0 183 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 NECTIN3Q9NQS3 549 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 PRTFDC1Q9NRG1 225 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 NPIPA1Q9UND3 350 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 ZNF835Q9Y2P0 537 aa12.27□□□□□ -0.45
RTN3-213ENST00000543552 TRBV11-1A0A0K0K1C0 115 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 TCRBV9S1A1TA0A576 114 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 CTAGE15A4D2H0 777 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 KLRC4-KLRK1H3BQV0 150 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 PRRG2O14669 202 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 ASNA1O43681 348 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 STK16O75716 305 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 TFEBP19484 476 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 HTR1EP28566 365 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 TNFRSF8P28908 595 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 SSTR1P30872 391 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 HNRNPH1P31943 449 aaKnown RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 SPRP35270 261 aaPredicted RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 KCNC1P48547 511 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 MTTPP55157 894 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 CAV1Q03135 178 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 EFTUD2Q15029 972 aaKnown RBP eCLIP12.26□□□□□ -0.453e-9■■■■□ 23.3
RTN3-213ENST00000543552 C3AR1Q16581 482 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 XKR6Q5GH73 641 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 CTAGE6Q86UF2 777 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 SCUBE1Q8IWY4 988 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 CYP4Z2PQ8N1L4 340 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 TMEM156Q8N614 296 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 SRFBP1Q8NEF9 429 aaKnown RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 NFAM1Q8NET5 270 aaPredicted RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 UBE2E3Q969T4 207 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 KIAA1191Q96A73 305 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 KCNC2Q96PR1 638 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 SERINC2Q96SA4 455 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 TSPAN10Q9H1Z9 355 aaPredicted RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 DPH5Q9H2P9 285 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 ADAP2Q9NPF8 381 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 CD274Q9NZQ7 290 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 TINAGQ9UJW2 476 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 FBXW2Q9UKT8 454 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 RNF112Q9ULX5 631 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 PPIEQ9UNP9 301 aaKnown RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 MTO1Q9Y2Z2 717 aaKnown RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 UTP11Q9Y3A2 253 aaKnown RBP12.26□□□□□ -0.45
RTN3-213ENST00000543552 SPACA6W5XKT8 324 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 APCP25054 2843 aa12.26□□□□□ -0.45
RTN3-213ENST00000543552 A8MUA0 341 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 C4orf51C9J302 202 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 TFECO14948 347 aaPredicted RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 PHGDHO43175 533 aaKnown RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 ZFAND5O76080 213 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 WISP3O95389 354 aaPredicted RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 COX6B1P14854 86 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 CD1DP15813 335 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 SERPINB1P30740 379 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 STX2P32856 288 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 HSPA7P48741 367 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 SSR4P51571 173 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 PLA2G16P53816 162 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 RAB10P61026 200 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 NAB1Q13506 487 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 ELAVL1Q15717 326 aaKnown RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 TBCCQ15814 346 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 ZNF630Q2M218 657 aaPredicted RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 ADPRMQ3LIE5 342 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 ZNF468Q5VIY5 522 aaPredicted RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 C3orf62Q6ZUJ4 267 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 LRRC70Q7Z2Q7 622 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 GDF7Q7Z4P5 450 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 SIAH3Q8IW03 269 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 MCEMP1Q8IX19 187 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 CTAGE3PQ8IX95 158 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 GPALPP1Q8IXQ4 340 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 TMEM132CQ8N3T6 1108 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 CPSF7Q8N684 471 aaKnown RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 FAM47BQ8NA70 645 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 APCDD1LQ8NCL9 501 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 PDPRQ8NCN5 879 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 SPATA4Q8NEY3 305 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 DAZLQ92904 295 aaKnown RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 WDR34Q96EX3 536 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 TMEM79Q9BSE2 394 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 RAB17Q9H0T7 212 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 CAB39LQ9H9S4 337 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 TIMMDC1Q9NPL8 285 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 PNO1Q9NRX1 252 aaKnown RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 YARS2Q9Y2Z4 477 aaKnown RBP12.25□□□□□ -0.45
RTN3-213ENST00000543552 CLCA3PQ9Y6N3 262 aa12.25□□□□□ -0.45
RTN3-213ENST00000543552 A0A0G2JN53 185 aa12.24□□□□□ -0.45
RTN3-213ENST00000543552 FAM159BA6NKW6 160 aa12.24□□□□□ -0.45
RTN3-213ENST00000543552 CCNT2O60583 730 aaKnown RBP12.24□□□□□ -0.45
RTN3-213ENST00000543552 ITGA10O75578 1167 aa12.24□□□□□ -0.45
RTN3-213ENST00000543552 IFNA16P05015 189 aa12.24□□□□□ -0.45
RTN3-213ENST00000543552 CRABP2P29373 138 aa12.24□□□□□ -0.45
RTN3-213ENST00000543552 MEOX1P50221 254 aa12.24□□□□□ -0.45
RTN3-213ENST00000543552 ST13P50502 369 aaKnown RBP12.24□□□□□ -0.45
RTN3-213ENST00000543552 IRF8Q02556 426 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms