RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	PCDH7	O60245	1069 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	DNAJB6	O75190	326 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	GUCY1B2	O75343	617 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	TGDS	O95455	350 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	ANXA4	P09525	319 aa	Predicted RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAM58BP	P0C7Q3	252 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	LBP	P18428	481 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	TCN2	P20062	427 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CPN2	P22792	545 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	MAPK1	P28482	360 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	EPHA3	P29320	983 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	TLX1	P31314	330 aa	Predicted RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	LSP1	P33241	339 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	TSFM	P43897	325 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	XCR1	P46094	333 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	ARFIP1	P53367	373 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	RPS15	P62841	145 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	SHC2	P98077	582 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	MAP7	Q14244	749 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	TUBB8	Q3ZCM7	444 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	XKR7	Q5GH72	579 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	C6orf136	Q5SQH8	315 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	LCN10	Q6JVE6	187 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF793	Q6ZN11	406 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	RNF165	Q6ZSG1	346 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CPLX4	Q7Z7G2	160 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	GPR180	Q86V85	440 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CA13	Q8N1Q1	262 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZCCHC7	Q8N3Z6	543 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	OR51Q1	Q8NH59	317 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CT55	Q8WUE5	264 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	KIAA1143	Q96AT1	154 aa	Predicted RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	MIEF2	Q96C03	454 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	PEX11G	Q96HA9	241 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	RILP	Q96NA2	401 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	MAPKAP1	Q9BPZ7	522 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	NPL	Q9BXD5	320 aa	Predicted RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	RBCK1	Q9BYM8	510 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	SPRY4	Q9C004	299 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CCDC86	Q9H6F5	360 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	DDX31	Q9H8H2	851 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CLK4	Q9HAZ1	481 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	LYAR	Q9NX58	379 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF282	Q9UDV7	671 aa	Predicted RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	MCM8	Q9UJA3	840 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	ADAM29	Q9UKF5	820 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CROT	Q9UKG9	612 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	EIF3L	Q9Y262	564 aa	Known RBP	9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	MAP4K5	Q9Y4K4	846 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545	CCL27	Q9Y4X3	112 aa		9.61	□□□□□ -0.87
CPSF7-221	ENST00000543545		A0A0A6YYD5	115 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545		A0A0G2JND7	137 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAM227A	F5H4B4	570 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	SDHD	O14521	159 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	LSM1	O15116	133 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	TMPRSS11D	O60235	418 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	B4GALT2	O60909	372 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	CD63	P08962	238 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	LIPC	P11150	499 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	RNH1	P13489	461 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	ITGAX	P20702	1163 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	PRPH2	P23942	346 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	TPP2	P29144	1249 aa	Predicted RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	TIA1	P31483	386 aa	Known RBP eCLIP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	DLST	P36957	453 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	IDH3A	P50213	366 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	SEC24C	P53992	1094 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	LIM2	P55344	173 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	PCBP4	P57723	403 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	RAB38	P57729	211 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	MAD2L1	Q13257	205 aa	Predicted RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	ERV3-1	Q14264	604 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	RPS6KA2	Q15349	733 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	TGIF1	Q15583	401 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	MINDY4	Q4G0A6	757 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	SLC9B1	Q4ZJI4	515 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	RFTN2	Q52LD8	501 aa	Predicted RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	VWA2	Q5GFL6	755 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	IL23R	Q5VWK5	629 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF385C	Q66K41	422 aa	Predicted RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	NOXRED1	Q6NXP6	359 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	EPGN	Q6UW88	154 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	SHISA6	Q6ZSJ9	500 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	OVCH1	Q7RTY7	1134 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	MAVS	Q7Z434	540 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAM47B	Q8NA70	645 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	RFWD2	Q8NHY2	731 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	NKD1	Q969G9	470 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	TBC1D20	Q96BZ9	403 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	METTL2A	Q96IZ6	378 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	ZNF317	Q96PQ6	595 aa	Predicted RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	C1orf50	Q9BV19	199 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	FAIM2	Q9BWQ8	316 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	NSRP1	Q9H0G5	558 aa	Known RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	RABEP2	Q9H5N1	569 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	SOX17	Q9H6I2	414 aa	Predicted RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	GPN2	Q9H9Y4	310 aa	Predicted RBP	9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	WDR41	Q9HAD4	459 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	LYRM4	Q9HD34	91 aa		9.6	□□□□□ -0.87
CPSF7-221	ENST00000543545	MKKS	Q9NPJ1	570 aa	Predicted RBP	9.6	□□□□□ -0.87

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms