RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 URB1O60287 2271 aaKnown RBP11.52□□□□□ -0.56
DDX55-210ENST00000543016 TRPC5OSA6NMA1 111 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 SGK494L7N484 410 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 PSMD12O00232 456 aaPredicted RBP11.52□□□□□ -0.57
DDX55-210ENST00000543016 TERTO14746 1132 aaKnown RBP11.52□□□□□ -0.57
DDX55-210ENST00000543016 HDAC3O15379 428 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 CHST10O43529 356 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 TLX3O43711 291 aaPredicted RBP11.52□□□□□ -0.57
DDX55-210ENST00000543016 RDH16O75452 317 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 TGDSO95455 350 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 ETHE1O95571 254 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 IGHEP01854 428 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 ACPPP15309 386 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 PTPN4P29074 926 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 BSGP35613 385 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 DLSTP36957 453 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 EIF2S3P41091 472 aaKnown RBP11.52□□□□□ -0.57
DDX55-210ENST00000543016 HTR6P50406 440 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 UCNP55089 124 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 TBL3Q12788 808 aaKnown RBP11.52□□□□□ -0.57
DDX55-210ENST00000543016 TUBB8Q3ZCM7 444 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 MLIPQ5VWP3 458 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 CYP20A1Q6UW02 462 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 FAM198BQ6UWH4 519 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 LRRC69Q6ZNQ3 347 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 WDR75Q8IWA0 830 aaKnown RBP11.52□□□□□ -0.57
DDX55-210ENST00000543016 DDIASQ8IXT1 998 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 TBC1D20Q96BZ9 403 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 MIEF2Q96C03 454 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 VPS50Q96JG6 964 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 IP6K3Q96PC2 410 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 ZNF717Q9BY31 904 aaPredicted RBP11.52□□□□□ -0.57
DDX55-210ENST00000543016 C1orf109Q9NX04 203 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 MCM8Q9UJA3 840 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 CROTQ9UKG9 612 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 DAPP1Q9UN19 280 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 FIS1Q9Y3D6 152 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 CCL27Q9Y4X3 112 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 MAU2Q9Y6X3 613 aa11.52□□□□□ -0.57
DDX55-210ENST00000543016 A0A0A6YYD5 115 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 TEX51A0A1B0GUA7 166 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 C1QTNF9BB2RNN3 333 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 CLDN4O14493 209 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 PIP5K1BO14986 540 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 BMP10O95393 424 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 ZGLP1P0C6A0 271 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 C1QTNF9P0C862 333 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 MAPK1P28482 360 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 TLX1P31314 330 aaPredicted RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 MDH1P40925 334 aaKnown RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 RAB38P57729 211 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 MAD2L1Q13257 205 aaPredicted RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 SLAMF1Q13291 335 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 BIKQ13323 160 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 NKG7Q16617 165 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 XKR7Q5GH72 579 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 SPDYAQ5MJ70 313 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 CCNYL2Q5T2Q4 361 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 BROXQ5VW32 411 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 MRM1Q6IN84 353 aaKnown RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 ATG14Q6ZNE5 492 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 Q6ZSR9 355 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 COX15Q7KZN9 410 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 PRSS41Q7RTY9 318 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 COMMD6Q7Z4G1 85 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 PROSER1Q86XN7 944 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 ZNF595Q8IYB9 648 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 CA13Q8N1Q1 262 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 RNF175Q8N4F7 328 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 METTL27Q8N6F8 245 aaPredicted RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 OR2Y1Q8NGV0 311 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 STT3BQ8TCJ2 826 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 AGR3Q8TD06 166 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 ZCCHC14Q8WYQ9 949 aaKnown RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 C19orf60Q96EN9 201 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 C11orf24Q96F05 449 aaPredicted RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 SLC45A3Q96JT2 553 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 CCNL2Q96S94 520 aaPredicted RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 SIKE1Q9BRV8 207 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 YIPF2Q9BWQ6 316 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 MRPL1Q9BYD6 325 aaKnown RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 TUBB1Q9H4B7 451 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 ZNF395Q9H8N7 513 aaPredicted RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 AKIRIN1Q9H9L7 192 aaPredicted RBP11.51□□□□□ -0.57
DDX55-210ENST00000543016 WDR41Q9HAD4 459 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 LRTM1Q9HBL6 345 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 SEMA3GQ9NS98 782 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 TCFL5Q9UL49 500 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 MMACHCQ9Y4U1 282 aa11.51□□□□□ -0.57
DDX55-210ENST00000543016 A0A087WV48 116 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 LOC101059948A0A1B0GTJ6 334 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 TMEM233B4DJY2 109 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 C4orf51C9J302 202 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 SAP18O00422 153 aaKnown RBP11.5□□□□□ -0.57
DDX55-210ENST00000543016 RTCAO00442 366 aaKnown RBP11.5□□□□□ -0.57
DDX55-210ENST00000543016 KLK10O43240 276 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 SH3BGRLO75368 114 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 SEC22BO75396 215 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 KLK1P06870 262 aa11.5□□□□□ -0.57
DDX55-210ENST00000543016 FHP07954 510 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms