RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 FCGR1AP12314 374 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 HSD17B1P14061 328 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 CD1EP15812 388 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 JUNDP17535 347 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 HNRNPA2B1P22626 353 aaKnown RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 PPIBP23284 216 aaKnown RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 PTX3P26022 381 aaPredicted RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 VARSP26640 1264 aaKnown RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 PBLDP30039 288 aaPredicted RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 CA5AP35218 305 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 GRK3P35626 688 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 VHLP40337 213 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 PREPP48147 710 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 BLKP51451 505 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ARFIP1P53367 373 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 FOXA1P55317 472 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 CLDN8P56748 225 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 C21orf58P58505 322 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 PFN3P60673 137 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 LTBQ06643 244 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ACSM2AQ08AH3 577 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 NFYCQ13952 458 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 E2F2Q14209 437 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 TRIM25Q14258 630 aaKnown RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 GRB7Q14451 532 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ABRAXAS2Q15018 415 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 IRF4Q15306 451 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 CPSF6Q16630 551 aaKnown RBP eCLIP7.99□□□□□ -1.13
CHD4-208ENST00000540960 PIGGQ5H8A4 983 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 MTX3Q5HYI7 312 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 THEMIS2Q5TEJ8 643 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ANXA8L1Q5VT79 327 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 IL23RQ5VWK5 629 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ACSM2BQ68CK6 577 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 Q6ZSR9 355 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 R3HCC1LQ7Z5L2 792 aaKnown RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 PACS2Q86VP3 889 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 C17orf64Q86WR6 236 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 Q8N9G6 341 aaPredicted RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 TP53I13Q8NBR0 393 aaPredicted RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 OR5K2Q8NHB8 316 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 HMGCLL1Q8TB92 370 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 SLC5A11Q8WWX8 675 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ZUFSPQ96AP4 578 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 SH3KBP1Q96B97 665 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 SLC22A18Q96BI1 424 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 TESCQ96BS2 214 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 SCARF2Q96GP6 870 aaPredicted RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 ITCHQ96J02 903 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 BMFQ96LC9 184 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 WDR92Q96MX6 357 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 KCNA7Q96RP8 456 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 AIF1LQ9BQI0 150 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 APOOQ9BUR5 198 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 OR52A5Q9H2C5 316 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 YY1AP1Q9H869 796 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 TNFRSF12AQ9NP84 129 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ACSS2Q9NR19 701 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 ATAD3AQ9NVI7 634 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 SIRT5Q9NXA8 310 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 TSR3Q9UJK0 312 aaKnown RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 CORO2BQ9UQ03 480 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 POMPQ9Y244 141 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 COQ6Q9Y2Z9 468 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 RNF11Q9Y3C5 154 aa7.99□□□□□ -1.13
CHD4-208ENST00000540960 NSD1Q96L73 2696 aaPredicted RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 MDC1Q14676 2089 aaKnown RBP7.99□□□□□ -1.13
CHD4-208ENST00000540960 KCNE1BA0A087WTH5 132 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 POM121BA6NF01 834 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 ANKUB1A6NFN9 424 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 AQP12BA6NM10 295 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 OR5K4A6NMS3 321 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 PPP6CO00743 305 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 CAPN5O15484 640 aaPredicted RBP7.98□□□□□ -1.13
CHD4-208ENST00000540960 LRRTM2O43300 516 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 ENTPD5O75356 428 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 SEMA3DO95025 777 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 ALDOCP09972 364 aaKnown RBP7.98□□□□□ -1.13
CHD4-208ENST00000540960 UMPSP11172 480 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 TCN2P20062 427 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 IMPA1P29218 277 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 PRDX3P30048 256 aaKnown RBP7.98□□□□□ -1.13
CHD4-208ENST00000540960 S100A3P33764 101 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 PTGER4P35408 488 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 HPCAL1P37235 193 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 GDF5P43026 501 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 RABIFP47224 123 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 TRPC1P48995 793 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 CCR8P51685 355 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 THOP1P52888 689 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 ART1P52961 327 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 RPL38P63173 70 aaKnown RBP7.98□□□□□ -1.13
CHD4-208ENST00000540960 EIF2B5Q13144 721 aaKnown RBP7.98□□□□□ -1.13
CHD4-208ENST00000540960 PWP1Q13610 501 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 NFATC4Q14934 902 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 RCN1Q15293 331 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 MAPKAPK3Q16644 382 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 CMPK2Q5EBM0 449 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 PHF19Q5T6S3 580 aa7.98□□□□□ -1.13
CHD4-208ENST00000540960 TMEM164Q5U3C3 297 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms