RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SPASTQ9UBP0 616 aa13.15□□□□□ -0.31
RTN3-210ENST00000540798 RAPGEFL1Q9UHV5 662 aa13.15□□□□□ -0.31
RTN3-210ENST00000540798 NAALAD2Q9Y3Q0 740 aa13.15□□□□□ -0.31
RTN3-210ENST00000540798 MAGEB3O15480 346 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 CAPN5O15484 640 aaPredicted RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 PRICKLE3O43900 615 aaPredicted RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 RNGTTO60942 597 aaKnown RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 MITFO75030 526 aaPredicted RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 ADAM23O75077 832 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 TRMUO75648 421 aaKnown RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 CRATP43155 626 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 RXRGP48443 463 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 RAB28P51157 221 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 PCBP3P57721 371 aaKnown RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 SGCGQ13326 291 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 SKIV2LQ15477 1246 aaKnown RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 CRB2Q5IJ48 1285 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 UBE3DQ7Z6J8 389 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 OR2A1Q8NGT9 310 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 ZNF420Q8TAQ5 688 aaPredicted RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 CREB3L4Q8TEY5 395 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 KLK6Q92876 244 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 ISOC1Q96CN7 298 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 FERD3LQ96RJ6 166 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 ORC6Q9Y5N6 252 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 HSPE1-MOB4S4R3N1 261 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 FEZF1A0PJY2 475 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 H7BY64 318 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 ABCB7O75027 752 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 UGT2B11O75310 529 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 HNRNPCP07910 306 aaKnown RBP eCLIP13.14□□□□□ -0.313e-6■■■□□ 17
RTN3-210ENST00000540798 HOXC4P09017 264 aaPredicted RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 IL7RP16871 459 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 UQCRC2P22695 453 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 ARHGDIAP52565 204 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 PRDX1Q06830 199 aaKnown RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 TOP3AQ13472 1001 aaPredicted RBP13.14□□□□□ -0.31
RTN3-210ENST00000540798 CLCA4Q14CN2 919 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 MEP1AQ16819 746 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 XAF1Q6GPH4 301 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 TRIM40Q6P9F5 258 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 PAGE2Q7Z2X7 111 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 RAB42Q8N4Z0 105 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 PRAP1Q96NZ9 151 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 RAB11FIP5Q9BXF6 653 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 POLR1BQ9H9Y6 1135 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 SLC28A3Q9HAS3 691 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 ACSL6Q9UKU0 697 aa13.14□□□□□ -0.31
RTN3-210ENST00000540798 DIRAS1O95057 198 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 FKBP9O95302 570 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 KRT75O95678 551 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 HTR1AP08908 422 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 ARAFP10398 606 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 COL9A1P20849 921 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 PCBP4P57723 403 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 GRSF1Q12849 480 aaKnown RBP eCLIP13.13□□□□□ -0.31
RTN3-210ENST00000540798 SCARB2Q14108 478 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 ZNF630Q2M218 657 aaPredicted RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 BROXQ5VW32 411 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 HORMAD1Q86X24 394 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 IL17RCQ8NAC3 791 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 TAMM41Q96BW9 452 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 DTNBP1Q96EV8 351 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 APOOQ9BUR5 198 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 CXorf36Q9H7Y0 433 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 PRM3Q9NNZ6 103 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 SLAMF7Q9NQ25 335 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 MIEF1Q9NQG6 463 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 BCKDKO14874 412 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 NDUFB5O43674 189 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 LCMT2O60294 686 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 CLEC3AO75596 197 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 C9P02748 559 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 CLK3P49761 638 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 MAPK12P53778 367 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 SAXO2Q658L1 398 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 MTSS1LQ765P7 747 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 FAM124AQ86V42 546 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 RNF130Q86XS8 419 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 OR13F1Q8NGS4 319 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 OR14C36Q8NHC7 312 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 OR5P2Q8WZ92 322 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 TPD52L3Q96J77 140 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 QRFPRQ96P65 431 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 C1QTNF7Q9BXJ2 289 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 AICDAQ9GZX7 198 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 MVB12BQ9H7P6 319 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 DDX31Q9H8H2 851 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 CXorf21Q9HAI6 301 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 THSD1Q9NS62 852 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 THUMPD1Q9NXG2 353 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 PLEKHM1Q9Y4G2 1056 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 ANHXE9PGG2 379 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 M0QX08 132 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 NDUFS4O43181 175 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 GSTM2P28161 218 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 TRA2BP62995 288 aaKnown RBP13.13□□□□□ -0.31
RTN3-210ENST00000540798 CYP4F2P78329 520 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 ZIC1Q15915 447 aa13.13□□□□□ -0.31
RTN3-210ENST00000540798 ZC3H7AQ8IWR0 971 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms