RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 QRFPRQ96P65 431 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 KCNC2Q96PR1 638 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 SERINC2Q96SA4 455 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 SLX1AQ9BQ83 275 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.85□□□□□ -0.673e-6■□□□□ 8.9
RTN3-209ENST00000538995 COPS7BQ9H9Q2 264 aaPredicted RBP10.85□□□□□ -0.67
RTN3-209ENST00000538995 KCNK13Q9HB14 408 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 PLA2G3Q9NZ20 509 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 STMN3Q9NZ72 180 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 ADGRE2Q9UHX3 823 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 ZNF180Q9UJW8 692 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 ZNF490Q9ULM2 529 aaPredicted RBP10.85□□□□□ -0.67
RTN3-209ENST00000538995 MRPS33Q9Y291 106 aaKnown RBP10.85□□□□□ -0.67
RTN3-209ENST00000538995 TSC22D4Q9Y3Q8 395 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 ASB1Q9Y576 335 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 PCDHGB6Q9Y5F9 930 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 IKBKGQ9Y6K9 419 aa10.85□□□□□ -0.67
RTN3-209ENST00000538995 ESPL1Q14674 2120 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 HIVEP3Q5T1R4 2406 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 CLDN4O14493 209 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 UGDHO60701 494 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 PRAMEF2O60811 474 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 KRT38O76015 456 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 SCELO95171 688 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 DDAH2O95865 285 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 GFAPP14136 432 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 MAOAP21397 527 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 MSH2P43246 934 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 PIK3CGP48736 1102 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 PLA2G16P53816 162 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 GRHL2Q6ISB3 625 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 MED27Q6P2C8 311 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 ZNF595Q8IYB9 648 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 CNPY4Q8N129 248 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 ELP5Q8TE02 316 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 ZNF473Q8WTR7 871 aaKnown RBP10.84□□□□□ -0.67
RTN3-209ENST00000538995 SSC4DQ8WTU2 575 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 MRRFQ96E11 262 aaKnown RBP10.84□□□□□ -0.67
RTN3-209ENST00000538995 GPR78Q96P69 363 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 PSMG3-AS1Q96PY0 264 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 PAFAH2Q99487 392 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 TBCDQ9BTW9 1192 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 MS4A8Q9BY19 250 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 LYRM4Q9HD34 91 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 OLAHQ9NV23 265 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 TMCO1Q9UM00 188 aa10.84□□□□□ -0.67
RTN3-209ENST00000538995 TNPO3Q9Y5L0 923 aaKnown RBP10.84□□□□□ -0.67
RTN3-209ENST00000538995 A0A087WUV0 522 aaPredicted RBP10.83□□□□□ -0.68
RTN3-209ENST00000538995 BLACEA4D250 179 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 A8MUI8 341 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 CRYABP02511 175 aaKnown RBP10.83□□□□□ -0.68
RTN3-209ENST00000538995 ABHD2P08910 425 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 RBP1P09455 135 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 COL6A2P12110 1019 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 CERS1P27544 350 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 PIK3CBP42338 1070 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 ARFIP1P53367 373 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 BTG2P78543 158 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 TUBA3CQ13748 450 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 RUNX2Q13950 521 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 PCBP2Q15366 365 aaKnown RBP eCLIP10.83□□□□□ -0.683e-35■■■■■ 31.2
RTN3-209ENST00000538995 PFKFB4Q16877 469 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 TSNAXIP1Q2TAA8 658 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 EIF2S3LQ2VIR3 472 aaKnown RBP10.83□□□□□ -0.68
RTN3-209ENST00000538995 TECRLQ5HYJ1 363 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 UBAP2Q5T6F2 1119 aaKnown RBP10.83□□□□□ -0.68
RTN3-209ENST00000538995 LIPJQ5W064 366 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 ZNF324BQ6AW86 544 aaPredicted RBP10.83□□□□□ -0.68
RTN3-209ENST00000538995 ADNP2Q6IQ32 1131 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 TUBA3EQ6PEY2 450 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 CHSY3Q70JA7 882 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 CRLF3Q8IUI8 442 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 BEST3Q8N1M1 668 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 ARMC10Q8N2F6 343 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 HORMAD2Q8N7B1 307 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 C7orf57Q8NEG2 295 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 OR7G3Q8NG95 312 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 PRR7Q8TB68 274 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 CMTM7Q96FZ5 175 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 MAGEB10Q96LZ2 347 aaPredicted RBP10.83□□□□□ -0.68
RTN3-209ENST00000538995 NECTIN3Q9NQS3 549 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 PRTFDC1Q9NRG1 225 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 DAPP1Q9UN19 280 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 PPIEQ9UNP9 301 aaKnown RBP10.83□□□□□ -0.68
RTN3-209ENST00000538995 ANGPTL3Q9Y5C1 460 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 CPAMD8Q8IZJ3 1885 aa10.83□□□□□ -0.68
RTN3-209ENST00000538995 SCN3AQ9NY46 2000 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 A0A0G2JN53 185 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 CYSRT1A8MQ03 144 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 FAM227AF5H4B4 570 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 CYR61O00622 381 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 SEMA7AO75326 666 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 RASAL1O95294 804 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 GP1BBP13224 206 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 LIM2P55344 173 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 PHEXP78562 749 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 KHDRBS2Q5VWX1 349 aaKnown RBP10.82□□□□□ -0.68
RTN3-209ENST00000538995 FCRLBQ6BAA4 426 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 IFT20Q8IY31 132 aa10.82□□□□□ -0.68
RTN3-209ENST00000538995 CYP4X1Q8N118 509 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms