RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TXLNGYQ9BZA5 131 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 SLC29A3Q9BZD2 475 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 RNF32Q9H0A6 362 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 KCNK13Q9HB14 408 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 PRDM7Q9NQW5 492 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 HIVEP3Q5T1R4 2406 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 PTPN13Q12923 2485 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 A0A088AWK7 358 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 EXOC1LA0A1B0GW35 172 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 RIPK2O43353 540 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 SIX3O95343 332 aaPredicted RBP13.87□□□□□ -0.19
USP28-204ENST00000537642 PCNAP12004 261 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 ZNF10P21506 573 aaPredicted RBP13.87□□□□□ -0.19
USP28-204ENST00000537642 HNRNPFP52597 415 aaKnown RBP13.87□□□□□ -0.19
USP28-204ENST00000537642 MTTPP55157 894 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 LIM2P55344 173 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 NR6A1Q15406 480 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 ZNF793Q6ZN11 406 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 SCUBE1Q8IWY4 988 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 CYP4X1Q8N118 509 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 RNF175Q8N4F7 328 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 FAM47BQ8NA70 645 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 NPAS2Q99743 824 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 STMN3Q9NZ72 180 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 XPR1Q9UBH6 696 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 MMACHCQ9Y4U1 282 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 ANGPTL3Q9Y5C1 460 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 CLDN16Q9Y5I7 305 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 LRRK2Q5S007 2527 aa13.87□□□□□ -0.19
USP28-204ENST00000537642 USP9XQ93008 2570 aaPredicted RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 TRAV17A0A0B4J275 112 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 SAGE2PA6NJ88 616 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 TGFBR3LH3BV60 316 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 RTCAO00442 366 aaKnown RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 E2F3O00716 465 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 MAN1A2O60476 641 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 SH3BGRLO75368 114 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 CBX6O95503 412 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 TGFB1P01137 390 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 SNRPAP09012 282 aaKnown RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 RBP1P09455 135 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 COL6A2P12110 1019 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 TGM3Q08188 693 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 GTF2H2Q13888 395 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 TSNAXIP1Q2TAA8 658 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 ACER2Q5QJU3 275 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 LIPJQ5W064 366 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 RPUSD3Q6P087 351 aaKnown RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 GTF2H2CQ6P1K8 395 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 ADGRD1Q6QNK2 874 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 GOLGA7Q7Z5G4 137 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 ZGRF1Q86YA3 2104 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 CRLF3Q8IUI8 442 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 GSPT2Q8IYD1 628 aaKnown RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 BEST3Q8N1M1 668 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 KIF2BQ8N4N8 673 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 FAM26EQ8N5C1 309 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 PTGR2Q8N8N7 351 aaPredicted RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 ARMC2Q8NEN0 867 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 NFAM1Q8NET5 270 aaPredicted RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 HUS1BQ8NHY5 278 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 ELP5Q8TE02 316 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 ADAMTS18Q8TE60 1221 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 GRHL3Q8TE85 626 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 PHF21BQ96EK2 531 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 SCYL1Q96KG9 808 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 ZNF354BQ96LW1 612 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 KCNC2Q96PR1 638 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 CSF3RQ99062 836 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.86□□□□□ -0.19
USP28-204ENST00000537642 EPB41L4BQ9H329 900 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 IPPKQ9H8X2 491 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 COPS7BQ9H9Q2 264 aaPredicted RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 PRTFDC1Q9NRG1 225 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 TEKT2Q9UIF3 430 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 DAPP1Q9UN19 280 aa13.86□□□□□ -0.19
USP28-204ENST00000537642 TNPO3Q9Y5L0 923 aaKnown RBP13.86□□□□□ -0.19
USP28-204ENST00000537642 SETXQ7Z333 2677 aaKnown RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 OR5H15A6NDH6 313 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 A8MUA0 341 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 CYR61O00622 381 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 SCELO95171 688 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 ATP5A1P25705 553 aaKnown RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 EEF1DP29692 281 aaKnown RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 SERPINB1P30740 379 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 HSD17B7P56937 341 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 DDX39BQ13838 428 aaKnown RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 MEP1AQ16819 746 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 EIF2S3LQ2VIR3 472 aaKnown RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 TMEM35AQ53FP2 167 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 METTL2BQ6P1Q9 378 aaKnown RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 TIFABQ6ZNK6 161 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 MYLK4Q86YV6 388 aaPredicted RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 ZNF595Q8IYB9 648 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 ACOT4Q8N9L9 421 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 L3MBTL4Q8NA19 623 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 SRFBP1Q8NEF9 429 aaKnown RBP13.85□□□□□ -0.19
USP28-204ENST00000537642 CMTM7Q96FZ5 175 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 TBCDQ9BTW9 1192 aa13.85□□□□□ -0.19
USP28-204ENST00000537642 OR51B5Q9H339 312 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms