RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 HAO2Q9NYQ3 351 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 TAS2R14Q9NYV8 317 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 ANAPC5Q9UJX4 755 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 MRPL11Q9Y3B7 192 aaKnown RBP3.57□□□□□ -1.84
CD44-235ENST00000532339 MXRA5Q9NR99 2828 aa3.57□□□□□ -1.84
CD44-235ENST00000532339 MEGF8Q7Z7M0 2845 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 FAM170AA1A519 330 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 FAM90A26D6RGX4 464 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 RTN2O75298 545 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 PRDM1O75626 825 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 VTNP04004 478 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 DARSP14868 501 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 GJA1P17302 382 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 PTAFRP25105 342 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 NMBRP28336 390 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 BDKRB2P30411 391 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 OR1D2P34982 312 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 FASLGP48023 281 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 SLC26A2P50443 739 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 CSE1LP55060 971 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 CDH13P55290 713 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 HNRNPH2P55795 449 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 NLRP11P59045 1033 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 KRTAP10-12P60413 245 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 PPP2R2BQ00005 443 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 MAD2L1Q13257 205 aaPredicted RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 SNAPC1Q16533 368 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 DECR1Q16698 335 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 CBWD6Q4V339 395 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 CBWD3Q5JTY5 395 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 EOGTQ5NDL2 527 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 DCST1Q5T197 706 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 TWF2Q6IBS0 349 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 DUS1LQ6P1R4 473 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 TRAT1Q6PIZ9 186 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 SUSD1Q6UWL2 747 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 INTS8Q75QN2 995 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 DNAJB7Q7Z6W7 309 aaPredicted RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 ZNF595Q8IYB9 648 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 C1orf87Q8N0U7 546 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 ELMOD1Q8N336 334 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 SLC38A9Q8NBW4 561 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 CTCFLQ8NI51 663 aaPredicted RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 C9orf43Q8TAL5 461 aaPredicted RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 TEKT4Q8WW24 435 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 CENPTQ96BT3 561 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 ARSGQ96EG1 525 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 ZNF583Q96ND8 569 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 LZTS2Q9BRK4 669 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 HGH1Q9BTY7 390 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 FAM129AQ9BZQ8 928 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 GOLPH3LQ9H4A5 285 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 ZNF696Q9H7X3 374 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 ANKZF1Q9H8Y5 726 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 ZWILCHQ9H900 591 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 ZNF71Q9NQZ8 489 aaPredicted RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 GKN1Q9NS71 199 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 DBNLQ9UJU6 430 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 ADAM28Q9UKQ2 775 aa3.56□□□□□ -1.84
CD44-235ENST00000532339 BAZ2AQ9UIF9 1905 aaKnown RBP3.56□□□□□ -1.84
CD44-235ENST00000532339 KNL1Q8NG31 2342 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 VPS13CQ709C8 3753 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 MEI4A8MW99 385 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 K7EQS6 105 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 SGK1O00141 431 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 LAD1O00515 517 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 DVL1O14640 695 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 PRRG1O14668 218 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 SPINT2O43291 252 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 DFNA5O60443 496 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 RECQL5O94762 991 aaPredicted RBP3.55□□□□□ -1.84
CD44-235ENST00000532339 TRUB2O95900 331 aaKnown RBP3.55□□□□□ -1.84
CD44-235ENST00000532339 VPREB1P12018 145 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 FGF5P12034 268 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 ITGA2P17301 1181 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 CKMT2P17540 419 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 UGT1A1P22309 533 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 NR2F2P24468 414 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 HRH2P25021 359 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 U2AF2P26368 475 aaKnown RBP eCLIP3.55□□□□□ -1.84
CD44-235ENST00000532339 CTNNA1P35221 906 aaKnown RBP3.55□□□□□ -1.84
CD44-235ENST00000532339 DVL1P1P54792 670 aaPredicted RBP3.55□□□□□ -1.84
CD44-235ENST00000532339 LINC01547P58512 204 aaPredicted RBP3.55□□□□□ -1.84
CD44-235ENST00000532339 TAS2R38P59533 333 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 RBP5P82980 135 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 PMP22Q01453 160 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 FOXM1Q08050 763 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 RALGDSQ12967 914 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 KRT33BQ14525 404 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 HYAL4Q2M3T9 481 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 PDSS1Q5T2R2 415 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 FBXO39Q8N4B4 442 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 ARL14Q8N4G2 192 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 ACVR1CQ8NER5 493 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 SLC24A4Q8NFF2 622 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 KIF18AQ8NI77 898 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 TAS1R2Q8TE23 839 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 HTR3CQ8WXA8 447 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 ZNF501Q96CX3 271 aaPredicted RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms