RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 PPIGQ13427 754 aaKnown RBP eCLIP3.45□□□□□ -1.86
CD44-219ENST00000525685 ITGA7Q13683 1181 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 HERC3Q15034 1050 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 UBE2SQ16763 222 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 HYAL4Q2M3T9 481 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 SPDYCQ5MJ68 293 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 MOXD1Q6UVY6 613 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 PET117Q6UWS5 81 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 PIGZQ86VD9 579 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 METTL23Q86XA0 190 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 THNSL1Q8IYQ7 743 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 ZNF843Q8N446 348 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 ZNF713Q8N859 430 aaPredicted RBP3.45□□□□□ -1.86
CD44-219ENST00000525685 NECAB1Q8N987 351 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 DBF4BQ8NFT6 615 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 FAM76AQ8TAV0 307 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 MRGPRDQ8TDS7 321 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 HPSE2Q8WWQ2 592 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 LRR1Q96L50 414 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 ZMAT2Q96NC0 199 aaKnown RBP3.45□□□□□ -1.86
CD44-219ENST00000525685 MUS81Q96NY9 551 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 MGME1Q9BQP7 344 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 SLC2A11Q9BYW1 496 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 OR2B2Q9GZK3 357 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 PXMP2Q9NR77 195 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 BARHL2Q9NY43 387 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 VPS54Q9P1Q0 977 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 GIMAP2Q9UG22 337 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 R4GN57 208 aa3.45□□□□□ -1.86
CD44-219ENST00000525685 SYNRGQ9UMZ2 1314 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 SMCO2A6NFE2 343 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 ANXA2P2A6NMY6 339 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 PTGESO14684 152 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CPLX1O14810 134 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CTAGE5O15320 804 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 DUSP11O75319 330 aaKnown RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 PAK4O96013 591 aaPredicted RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 GSRP00390 522 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 PGK1P00558 417 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CSN3P07498 182 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 PATE4P0C8F1 98 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 STAG3L1P0CL83 205 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CDC25CP30307 473 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 WNT5AP41221 380 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 RGS19P49795 217 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 NPY4RP50391 375 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 BMXP51813 675 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 ATP12AP54707 1039 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 UBASH3AP57075 661 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 B3GALT5-AS1P59052 145 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 KRTAP10-5P60370 271 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 DLK1P80370 383 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 AKAP17AQ02040 695 aaKnown RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 ZNF273Q14593 569 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 P2RY6Q15077 328 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 SGSM1Q2NKQ1 1148 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 OR4A47Q6IF82 309 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 FAM53AQ6NSI3 398 aaPredicted RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 FBXL22Q6P050 247 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 AMIGO1Q86WK6 493 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 APLFQ8IW19 511 aaPredicted RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 CCDC83Q8IWF9 413 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 KIRREL3Q8IZU9 778 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CCDC63Q8NA47 563 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 Q8NFD4 153 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CCDC148Q8NFR7 591 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 OLIG1Q8TAK6 271 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CCDC12Q8WUD4 166 aaPredicted RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 METTL21AQ8WXB1 218 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 TSACCQ96A04 125 aaPredicted RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 LGALS12Q96DT0 336 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 IWS1Q96ST2 819 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 CCDC3Q9BQI4 270 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 UPF3AQ9H1J1 476 aaKnown RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 ST6GALNAC4Q9H4F1 302 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 C11orf49Q9H6J7 331 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 ZNF696Q9H7X3 374 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 PSTPIP2Q9H939 334 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 LIPGQ9Y5X9 500 aa3.44□□□□□ -1.86
CD44-219ENST00000525685 BAZ2BQ9UIF8 2168 aaKnown RBP3.44□□□□□ -1.86
CD44-219ENST00000525685 DOCK5Q9H7D0 1870 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 HTTP42858 3142 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 LTBP2Q14767 1821 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 KBTBD13C9JR72 458 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 EDIL3O43854 480 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 ZNF500O60304 480 aaPredicted RBP3.43□□□□□ -1.86
CD44-219ENST00000525685 DDHD2O94830 711 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 RPN1P04843 607 aaKnown RBP3.43□□□□□ -1.86
CD44-219ENST00000525685 FAM157CP0CG43 387 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 CEACAM1P13688 526 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 EPCAMP16422 314 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 GNB3P16520 340 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 GNA11P29992 359 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 ALDH4A1P30038 563 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 CCND2P30279 289 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 PRKCIP41743 596 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 NKX2-1P43699 371 aaPredicted RBP3.43□□□□□ -1.86
CD44-219ENST00000525685 VAMP7P51809 220 aa3.43□□□□□ -1.86
CD44-219ENST00000525685 CRIP2P52943 208 aaPredicted RBP3.43□□□□□ -1.86
CD44-219ENST00000525685 BEX3Q00994 111 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms