RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CLEC18BQ6UXF7 455 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 ISLR2Q6UXK2 745 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 CLEC18CQ8NCF0 446 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 TMEM52Q8NDY8 209 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 SRFBP1Q8NEF9 429 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 OR52B6Q8NGF0 335 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 HUS1BQ8NHY5 278 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 ELP5Q8TE02 316 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 PPP4R1Q8TF05 950 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 AENQ8WTP8 325 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 METTL21AQ8WXB1 218 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 HAS2Q92819 552 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 TSLPQ969D9 159 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 PHF21BQ96EK2 531 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 CMTM7Q96FZ5 175 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 NSUN5Q96P11 429 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 KCNC2Q96PR1 638 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 SERINC2Q96SA4 455 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 TBCDQ9BTW9 1192 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 RNF32Q9H0A6 362 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 NOL11Q9H8H0 719 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 LYRM4Q9HD34 91 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 MMP25Q9NPA2 562 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 NECTIN3Q9NQS3 549 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 PRDM9Q9NQV7 894 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 CPSF2Q9P2I0 782 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 EMCNQ9ULC0 261 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 B3GNT3Q9Y2A9 372 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 RNF11Q9Y3C5 154 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 MMACHCQ9Y4U1 282 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 PCDHGA11Q9Y5H2 935 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 CSAG2Q9Y5P2 127 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 SCN2AQ99250 2005 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 USP9YO00507 2555 aaPredicted RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 SETXQ7Z333 2677 aaKnown RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 PTPN13Q12923 2485 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 A0A1W2PPM1 405 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 CDK2AP1O14519 115 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 DLX3O60479 287 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 PRMT3O60678 531 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 CLDN9O95484 217 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 ETHE1O95571 254 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 ITGAMP11215 1152 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 PYGBP11216 843 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 HIST1H1TP22492 207 aaPredicted RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 PLA2G16P53816 162 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 PRKAA2P54646 552 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 SLC18A2Q05940 514 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 TERF2Q15554 542 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 UNC50Q53HI1 259 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 SFT2D3Q587I9 215 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 COLEC12Q5KU26 742 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 C10orf62Q5T681 223 aaPredicted RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 MRM1Q6IN84 353 aaKnown RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 TRIM40Q6P9F5 258 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 CHSY3Q70JA7 882 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 PRICKLE2Q7Z3G6 844 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 CUZD1Q86UP6 607 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 ZCCHC7Q8N3Z6 543 aaKnown RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 RNF175Q8N4F7 328 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 ACOT4Q8N9L9 421 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 MYRIPQ8NFW9 859 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 BRIX1Q8TDN6 353 aaKnown RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 ADAMTS18Q8TE60 1221 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 TM9SF4Q92544 642 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 NPAS2Q99743 824 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 CCDC77Q9BR77 488 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 ROGDIQ9GZN7 287 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 DDX31Q9H8H2 851 aaKnown RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 DMRT3Q9NQL9 472 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 C19orf25Q9UFG5 118 aaPredicted RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 G3BP2Q9UN86 482 aaKnown RBP9.11□□□□□ -0.95
RNF4-221ENST00000513643 PCDHGA10Q9Y5H3 936 aa9.11□□□□□ -0.95
RNF4-221ENST00000513643 HIVEP3Q5T1R4 2406 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 A0A088AWK7 358 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 A0A0G2JN53 185 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 FOXO6A8MYZ6 492 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 G3V2L1 256 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 PLPP1O14494 284 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 B3GALT2O43825 422 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 B4GALT2O60909 372 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 CTNSO60931 367 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 SMIM24O75264 130 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 CDC123O75794 336 aaPredicted RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 SEC24DO94855 1032 aaPredicted RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 SLU7O95391 586 aaKnown RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 TGFB1P01137 390 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 IMPDH1P20839 514 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 MAOAP21397 527 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 ZNF10P21506 573 aaPredicted RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 ATP5F1P24539 256 aaPredicted RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 PTX3P26022 381 aaPredicted RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 CERS1P27544 350 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 CRHR1P34998 444 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 BSGP35613 385 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 MLLT10P55197 1068 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 SLC26A5P58743 744 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 AP2B1P63010 937 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 HERVK_113P63132 956 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 IGLV3-21P80748 117 aaPredicted RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms