RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, humanhuman

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-215ENST00000511843 PAGE2BQ5JRK9 111 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 HIST2H2AA3Q6FI13 130 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 MED27Q6P2C8 311 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 TRIM40Q6P9F5 258 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 CLEC18BQ6UXF7 455 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 ZNF793Q6ZN11 406 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 QSOX2Q6ZRP7 698 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 GOLGA7Q7Z5G4 137 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 CCDC91Q7Z6B0 441 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 IFT20Q8IY31 132 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 BEST3Q8N1M1 668 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 CLEC18CQ8NCF0 446 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 OR7G3Q8NG95 312 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 PRR7Q8TB68 274 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 M1APQ8TC57 530 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 ISL2Q96A47 359 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 PHF21BQ96EK2 531 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 SLC29A3Q9BZD2 475 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 PITHD1Q9GZP4 211 aaPredicted RBP12.46□□□□□ -0.41
RNF4-215ENST00000511843 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.46□□□□□ -0.41
RNF4-215ENST00000511843 COPS7BQ9H9Q2 264 aaPredicted RBP12.46□□□□□ -0.41
RNF4-215ENST00000511843 PRDM9Q9NQV7 894 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 PRDM7Q9NQW5 492 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 STMN3Q9NZ72 180 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 EML6Q6ZMW3 1958 aa12.46□□□□□ -0.41
RNF4-215ENST00000511843 TCRBV16S1A1N1A0A5B0 115 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 RIPK2O43353 540 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 KLK8O60259 260 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 KRT38O76015 456 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 CBX6O95503 412 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 RNF224P0DH78 156 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 MYBL2P10244 700 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 EEF1DP29692 281 aaKnown RBP12.45□□□□□ -0.42
RNF4-215ENST00000511843 PIK3CGP48736 1102 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 MTTPP55157 894 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 LIM2P55344 173 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 RAB38P57729 211 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 GTF2H2Q13888 395 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 EXT1Q16394 746 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 ACER2Q5QJU3 275 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 GRHL2Q6ISB3 625 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 H3F3CQ6NXT2 135 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 GTF2H2CQ6P1K8 395 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 RPS27LQ71UM5 84 aaKnown RBP12.45□□□□□ -0.42
RNF4-215ENST00000511843 TAOK1Q7L7X3 1001 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 SCUBE1Q8IWY4 988 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 LAS2Q8IYD9 372 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 FAM26EQ8N5C1 309 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 PTGR2Q8N8N7 351 aaPredicted RBP12.45□□□□□ -0.42
RNF4-215ENST00000511843 HUS1BQ8NHY5 278 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 SREK1Q8WXA9 508 aaKnown RBP12.45□□□□□ -0.42
RNF4-215ENST00000511843 HAS2Q92819 552 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 NSUN5Q96P11 429 aaKnown RBP12.45□□□□□ -0.42
RNF4-215ENST00000511843 CDK15Q96Q40 435 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 TAAR6Q96RI8 345 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 SERINC2Q96SA4 455 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 MTERF1Q99551 399 aaKnown RBP12.45□□□□□ -0.42
RNF4-215ENST00000511843 MAPKAP1Q9BPZ7 522 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 OR51B5Q9H339 312 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 ACTR8Q9H981 624 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 MMP25Q9NPA2 562 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 PRTFDC1Q9NRG1 225 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 PNO1Q9NRX1 252 aaKnown RBP12.45□□□□□ -0.42
RNF4-215ENST00000511843 XPR1Q9UBH6 696 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 ZNF180Q9UJW8 692 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 RNF11Q9Y3C5 154 aa12.45□□□□□ -0.42
RNF4-215ENST00000511843 PTPN13Q12923 2485 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 OR5H15A6NDH6 313 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 SAGE2PA6NJ88 616 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 CYR61O00622 381 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 E2F3O00716 465 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 OR7A17O14581 309 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 MYO1DO94832 1006 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 ATP5A1P25705 553 aaKnown RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 ARL1P40616 181 aaPredicted RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 AP2B1P63010 937 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 PMP22Q01453 160 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 SLC13A2Q13183 592 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 PCBP2Q15366 365 aaKnown RBP eCLIP12.44□□□□□ -0.42
RNF4-215ENST00000511843 CPSF6Q16630 551 aaKnown RBP eCLIP12.44□□□□□ -0.42
RNF4-215ENST00000511843 TEX35Q5T0J7 233 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 NFAM1Q8NET5 270 aaPredicted RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 SEC16BQ96JE7 1060 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 SIGLEC12Q96PQ1 595 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 BARD1Q99728 777 aaKnown RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 NPLQ9BXD5 320 aaPredicted RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 HES7Q9BYE0 225 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 TXLNGYQ9BZA5 131 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 EPB41L4BQ9H329 900 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 CDCP1Q9H5V8 836 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 NOL11Q9H8H0 719 aaKnown RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 IPPKQ9H8X2 491 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 CLK4Q9HAZ1 481 aaKnown RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 DMRT3Q9NQL9 472 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 KCMF1Q9P0J7 381 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 DAPP1Q9UN19 280 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 CLDN16Q9Y5I7 305 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 FLNBO75369 2602 aaKnown RBP12.44□□□□□ -0.42
RNF4-215ENST00000511843 HECTD1Q9ULT8 2610 aa12.44□□□□□ -0.42
RNF4-215ENST00000511843 USP9XQ93008 2570 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms