RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 SLC12A2P55011 1212 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 SLC13A2Q13183 592 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 TERF2Q15554 542 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 TGFBIQ15582 683 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 ADNP2Q6IQ32 1131 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 CLNKQ7Z7G1 428 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 SULF2Q8IWU5 870 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 ZBED8Q8IZ13 594 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 CYP4Z2PQ8N1L4 340 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 SPATA6LQ8N4H0 392 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 NCLNQ969V3 563 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 LURAP1Q96LR2 239 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 DMRTA2Q96SC8 542 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 CSF3RQ99062 836 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 MCMBPQ9BTE3 642 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 DERL2Q9GZP9 239 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 NT5DC2Q9H857 520 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 CAB39LQ9H9S4 337 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 NSMCE4AQ9NXX6 385 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 WWOXQ9NZC7 414 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 GPRC5BQ9NZH0 403 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 PPT2Q9UMR5 302 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 SNX24Q9Y343 169 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 CLDN16Q9Y5I7 305 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 APCP25054 2843 aa10.76□□□□□ -0.69
HMGCS1-204ENST00000507293 A0A088AWK7 358 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 A0A1B0GTH9 108 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 ANKDD1BA6NHY2 528 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 E9PLN8 166 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CCDC188H7C350 402 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CLDN4O14493 209 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CLGNO14967 610 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 TAPBPO15533 448 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PHGDHO43175 533 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PEX1O43933 1283 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 HS6ST1O60243 411 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PRKNO60260 465 aaPredicted RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CDC40O60508 579 aaKnown RBP eCLIP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PRAMEF4O60810 478 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CLEC3AO75596 197 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 WISP3O95389 354 aaPredicted RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 TBX6O95947 436 aaPredicted RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 TPOP07202 933 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 ZNF10P21506 573 aaPredicted RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CERS1P27544 350 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 KIR3DL1P43629 444 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 HSPA7P48741 367 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 GPR143P51810 404 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PLA2G16P53816 162 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 HSD17B7P56937 341 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 GPR85P60893 370 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 GNG11P61952 73 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 ADPRMQ3LIE5 342 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 FBXO48Q5FWF7 155 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PRAMEF9Q5VWM5 478 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 TRIM40Q6P9F5 258 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 C16orf47Q6ZP98 133 aaPredicted RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 MDGA2Q7Z553 956 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 VN1R5Q7Z5H4 357 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CD163Q86VB7 1156 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 ZNF295-AS1Q8N0V1 137 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 EID3Q8N140 333 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 TCAIMQ8N3R3 496 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 SNX31Q8N9S9 440 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 OR2L5Q8NG80 312 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 SREK1Q8WXA9 508 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 ESAMQ96AP7 390 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 SDCCAG3Q96C92 435 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 SERINC2Q96SA4 455 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 NAPGQ99747 312 aaPredicted RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 VKORC1Q9BQB6 163 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CCDC77Q9BR77 488 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 CAPS2Q9BXY5 557 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 COPS7BQ9H9Q2 264 aaPredicted RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 LIN28AQ9H9Z2 209 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 ADAP2Q9NPF8 381 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 DNAJC11Q9NVH1 559 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PPIEQ9UNP9 301 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 MRPS33Q9Y291 106 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 MTO1Q9Y2Z2 717 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 SAR1BQ9Y6B6 198 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 HCFC1P51610 2035 aa10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 PHF3Q92576 2039 aaKnown RBP10.75□□□□□ -0.69
HMGCS1-204ENST00000507293 MYOCOSA0A1B0GUC4 107 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 CXorf49A8MYA2 514 aaPredicted RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 ZFAND5O76080 213 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 CCDC166P0CW27 439 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 TFEBP19484 476 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 POU3F2P20265 443 aaPredicted RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 SSTR1P30872 391 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 PTGS2P35354 604 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 PAFAH1B1P43034 410 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 SSR4P51571 173 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 MTTPP55157 894 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 LIM2P55344 173 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 MRPS25P82663 173 aaKnown RBP10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 POU4F1Q01851 419 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 OR4D1Q15615 310 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 CMPK2Q5EBM0 449 aa10.74□□□□□ -0.69
HMGCS1-204ENST00000507293 XKR6Q5GH73 641 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms