RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ULBP3Q9BZM4 244 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 CHRNA10Q9GZZ6 450 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 CARD9Q9H257 536 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 GOLPH3LQ9H4A5 285 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 ACTL8Q9H568 366 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 FGF22Q9HCT0 170 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 MRPL47Q9HD33 250 aaKnown RBP3.76□□□□□ -1.81
USP54-217ENST00000498213 PDE7BQ9NP56 450 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 MBNL1Q9NR56 388 aaKnown RBP3.76□□□□□ -1.81
USP54-217ENST00000498213 PARVAQ9NVD7 372 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 PADI1Q9ULC6 663 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 NEU3Q9UQ49 428 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 SCINQ9Y6U3 715 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 CHD5Q8TDI0 1954 aa3.76□□□□□ -1.81
USP54-217ENST00000498213 SYNJ2BP-COX16A0A087WUM0 186 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 TMEM202A6NGA9 273 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 CD8B2A6NJW9 211 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ZNF487B1APH4 448 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 RNF103O00237 685 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 RRHO14718 337 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 PCDH17O14917 1159 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 CNOT3O75175 753 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 GRAP2O75791 330 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ZWINTO95229 277 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 VIPP01282 170 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 IFNA2P01563 188 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 JCHAINP01591 159 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ALPPP05187 535 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 RAB40ALP0C0E4 278 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 F3P13726 295 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ST6GAL1P15907 406 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 TFEBP19484 476 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 MST1P26927 711 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 CA5AP35218 305 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 MTIF2P46199 727 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 SMSP52788 366 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 MAZP56270 477 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 GSDMDP57764 484 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 TPI1P60174 286 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 UBE2HP62256 183 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 RPS15P62841 145 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 DEFA6Q01524 100 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 RALGDSQ12967 914 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 MYBPHQ13203 477 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 DPYSL2Q16555 572 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 PYCR3Q53H96 274 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ERMARDQ5T6L9 678 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ARMC12Q5T9G4 340 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 IZUMO3Q5VZ72 239 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 MTFR2Q6P444 385 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 TLDC1Q6P9B6 456 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 DCUN1D2Q6PH85 259 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 IYDQ6PHW0 289 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 FBXO38Q6PIJ6 1188 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ABRAXAS1Q6UWZ7 409 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 IGFL3Q6UXB1 125 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 NCCRP1Q6ZVX7 275 aaPredicted RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 CCDC28AQ8IWP9 274 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 CT55Q8WUE5 264 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 FAM172AQ8WUF8 416 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 RXFP2Q8WXD0 754 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 OR1E3Q8WZA6 343 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 STAMBPL1Q96FJ0 436 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 COX14Q96I36 57 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ZNF514Q96K75 400 aaPredicted RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 TIMM29Q9BSF4 260 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 TUBGCP2Q9BSJ2 902 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ZSCAN5AQ9BUG6 496 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 C19orf24Q9BVV8 132 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 POLR1EQ9GZS1 481 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 BRD8Q9H0E9 1235 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 FAM234AQ9H0X4 552 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 PCDHAC1Q9H158 963 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 SIX2Q9NPC8 291 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 ADAM22Q9P0K1 906 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 COX16Q9P0S2 106 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 MYO1AQ9UBC5 1043 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 LHX3Q9UBR4 397 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 NOCTQ9UK39 431 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 FZD10Q9ULW2 581 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 PADI2Q9Y2J8 665 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 OR1A2Q9Y585 309 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 CSAG2Q9Y5P2 127 aa3.75□□□□□ -1.81
USP54-217ENST00000498213 BZW2Q9Y6E2 419 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 MDC1Q14676 2089 aaKnown RBP3.75□□□□□ -1.81
USP54-217ENST00000498213 SLC22A23A1A5C7 686 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 EEF2KO00418 725 aaKnown RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 CHUKO15111 745 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 PRPSAP2O60256 369 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 MTA2O94776 668 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 GFPT2O94808 682 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 KIAA0754O94854 1291 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 PGLSO95336 258 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 MBPP02686 304 aaPredicted RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 PCCBP05166 539 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 KLK3P07288 261 aaPredicted RBP3.74□□□□□ -1.81
USP54-217ENST00000498213 FERP16591 822 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 NDUFS1P28331 727 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 ACTR1BP42025 376 aa3.74□□□□□ -1.81
USP54-217ENST00000498213 GPR1P46091 355 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms