RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 IGFBP1P08833 259 aaPredicted RBP15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 NPPBP16860 134 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 GPR1P46091 355 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 ST8SIA6P61647 398 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 HBA1P69905 142 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 SPIBQ01892 262 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 PRSS53Q2L4Q9 553 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 FNDC3BQ53EP0 1204 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 C1orf53Q5VUE5 145 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 ARMC8Q8IUR7 673 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 NPAS3Q8IXF0 933 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 RDH12Q96NR8 316 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 FAM120CQ9NX05 1096 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 AP3M1Q9Y2T2 418 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 MAP4K5Q9Y4K4 846 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 PCDHGA6Q9Y5G7 932 aa15.83■□□□□ 0.12
CCDC88B-210ENST00000494566 ADRA2AP08913 450 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 CISD3P0C7P0 127 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 CKMT1AP12532 417 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 ZNF8P17098 575 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 HNF4AP41235 474 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 COPZ1P61923 177 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 CAMK1Q14012 370 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 TAB1Q15750 504 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 TPRG1LQ5T0D9 272 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 COMMD6Q7Z4G1 85 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 ZNF547Q8IVP9 402 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 OR8H2Q8N162 312 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 STX19Q8N4C7 294 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 VANGL1Q8TAA9 524 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 SPPL3Q8TCT6 385 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 ATL1Q8WXF7 558 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 TIFAQ96CG3 184 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 DTD2Q96FN9 168 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 OR5M11Q96RB7 305 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 GPATCH2Q9NW75 528 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 WDR37Q9Y2I8 494 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 SOX14O95416 240 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 HTRA4P83105 476 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 RGNQ15493 299 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 LEXMQ3ZCV2 418 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 ZNF404Q494X3 552 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 C1QTNF12Q5T7M4 302 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 SYT6Q5T7P8 510 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 MED27Q6P2C8 311 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 TMC5Q6UXY8 1006 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 FAM83HQ6ZRV2 1179 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 KIAA0907Q7Z7F0 614 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 CHTF18Q8WVB6 975 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 S100ZQ8WXG8 99 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 BEX2Q9BXY8 128 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 TM9SF3Q9HD45 589 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 INSL6Q9Y581 213 aa15.82■□□□□ 0.12
CCDC88B-210ENST00000494566 C1orf226A1L170 272 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 OR2A25A4D2G3 310 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 GCM2O75603 506 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 APOL3O95236 402 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 C6P13671 934 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 FPR1P21462 350 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 TIA1P31483 386 aaKnown RBP eCLIP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 LRRC74AQ0VAA2 488 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 KCNC3Q14003 757 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 UBE2UQ5VVX9 321 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 CBLL1Q75N03 491 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 GPR155Q7Z3F1 870 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 MEX3DQ86XN8 651 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 SYNPOQ8N3V7 929 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 PLA2G15Q8NCC3 412 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 RHOXF1Q8NHV9 184 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 TM7SF3Q9NS93 570 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 WWP2O00308 870 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 LRRTM2O43300 516 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 LZTS3O60299 673 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 UGDHO60701 494 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 EIF2DP41214 584 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 RPS26P62854 115 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 CAPN13Q6MZZ7 669 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 EIF3MQ7L2H7 374 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 VPS35Q96QK1 796 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 ITPAQ9BY32 194 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 NECTIN3Q9NQS3 549 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 DDX28Q9NUL7 540 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 SPASTQ9UBP0 616 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 NDRG4Q9ULP0 352 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 TSPAN11A1L157 253 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 TMEM229AB2RXF0 380 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 NPIPB8E9PQR5 432 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 TNFRSF11BO00300 401 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 DSCR3O14972 297 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 MFN2O95140 757 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 KLK1P06870 262 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 ITGAMP11215 1152 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 PTGER1P34995 402 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 MPEG1Q2M385 716 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 AGAP7PQ5VUJ5 663 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 RSBN1Q5VWQ0 802 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 AKAP14Q86UN6 197 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 PARP16Q8N5Y8 322 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 GGHQ92820 318 aa15.81■□□□□ 0.12
CCDC88B-210ENST00000494566 BADQ92934 168 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms