RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF234Q14588 700 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TNFAIP8L2Q6P589 184 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ENPP7Q6UWV6 458 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 BTLAQ7Z6A9 289 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AMZ2Q86W34 360 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C12orf40Q86WS4 652 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GTF2H4Q92759 462 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ARMC5Q96C12 935 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NRTNQ99748 197 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MCOLN1Q9GZU1 580 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HOXD1Q9GZZ0 328 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TM7SF3Q9NS93 570 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 KCNN3Q9UGI6 736 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FBXW2Q9UKT8 454 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 NEU3Q9UQ49 428 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PCDHGB6Q9Y5F9 930 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PCDHGA11Q9Y5H2 935 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PRRT4C9JH25 899 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 AP2A2O94973 939 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLITRK5O94991 958 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C8orf89P0DMQ9 161 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MTHFD2P13995 350 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HTR1BP28222 390 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CLDN2P57739 230 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RAB8AP61006 207 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 C1orf61Q13536 156 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CLCA4Q14CN2 919 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 LRIT3Q3SXY7 679 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 HTR3DQ70Z44 454 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 ZNF767PQ75MW2 155 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 RRM2BQ7LG56 351 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 THOC6Q86W42 341 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SIMC1Q8NDZ2 872 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 VANGL1Q8TAA9 524 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 FCGR1BQ92637 280 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 TFGQ92734 400 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 GLYATL1Q969I3 302 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 UHRF1Q96T88 793 aaPredicted RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SORBS1Q9BX66 1292 aaKnown RBP10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 CD244Q9BZW8 370 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SERHL2Q9H4I8 314 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SLC32A1Q9H598 525 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PDFQ9HBH1 243 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 SERHLQ9NQF3 203 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 MALT1Q9UDY8 824 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 PFDN2Q9UHV9 154 aa10.34□□□□□ -0.75
MSH5-SAPCD1-207ENST00000493662 H3BNC9 293 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FPGTO14772 594 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ACTR1BP42025 376 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 P2RX3P56373 397 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ACTR1AP61163 376 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RPS13P62277 151 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CDK10Q15131 360 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 WSCD2Q2TBF2 565 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CATSPEREQ5SY80 951 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FRG2Q64ET8 278 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 STEAP3Q658P3 488 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 METTL3Q86U44 580 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 RETREG3Q86VR2 466 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GALNT11Q8NCW6 608 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SMARCD2Q92925 531 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MYRFLQ96LU7 910 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FRG2BQ96QU4 278 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LRRC3Q9BY71 257 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TTYH1Q9H313 450 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 STOX2Q9P2F5 926 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MBD1Q9UIS9 605 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 FBXL21Q9UKT6 434 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 POLHQ9Y253 713 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CACNA1GO43497 2377 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 TPRP12270 2363 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GPR179Q6PRD1 2367 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SPAG17Q6Q759 2223 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 GMFGO60234 142 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 IFNA7P01567 189 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 IGLV3-27P01718 113 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CXCL10P02778 98 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ASGR2P07307 311 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CTSEP14091 401 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 AGXTP21549 392 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PSMA1P25786 263 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SSR2P43308 183 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 EEFSECP57772 596 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ALDH6A1Q02252 535 aaKnown RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ADNP2Q6IQ32 1131 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 C17orf64Q86WR6 236 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CNTN4Q8IWV2 1026 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PRSS58Q8IYP2 241 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CELF2-AS1Q8N7Q2 184 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 OR5K1Q8NHB7 308 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 XAGE5Q8WWM1 108 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 CXorf40BQ96DE9 158 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 BBS4Q96RK4 519 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 SAV1Q9H4B6 383 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 ACSL6Q9UKU0 697 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 MAGED1Q9Y5V3 778 aaPredicted RBP10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 NINQ8N4C6 2090 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 PRAMEF33A0A0G2JMD5 474 aa10.33□□□□□ -0.76
MSH5-SAPCD1-207ENST00000493662 E7EQ34 232 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms