RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 EIF2S3P41091 472 aaKnown RBP16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ETV3P41162 512 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 TMEM115Q12893 351 aaPredicted RBP16.97■□□□□ 0.31
NPHP4-209ENST00000489180 C1orf189Q5VU69 101 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 SCAMP4Q969E2 229 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 RBCK1Q9BYM8 510 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ADAMTS10Q9H324 1103 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 SERINC1Q9NRX5 453 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 FBXL12Q9NXK8 326 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 SEC14L4Q9UDX3 406 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 A0A096LPI6 279 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 E7ESA3 106 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 CDC40O60508 579 aaKnown RBP eCLIP16.97■□□□□ 0.31
NPHP4-209ENST00000489180 HCKP08631 526 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ITGA5P08648 1049 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 FAM163BP0C2L3 166 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 UQCRC2P22695 453 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 SLC29A4Q7RTT9 530 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF367Q7RTV3 350 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 DCAF4L2Q8NA75 395 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 OVCA2Q8WZ82 227 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 IGSF8Q969P0 613 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 PCYT2Q99447 389 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 NLGN3Q9NZ94 848 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 GSKIPQ9P0R6 139 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 PLCL2Q9UPR0 1127 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 PCDHB3Q9Y5E6 796 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 PIK3C2AO00443 1686 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 GJB5O95377 273 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 S1PR4O95977 384 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 IFNA21P01568 189 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 NDUFS1P28331 727 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF81P51508 661 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ARF3P61204 181 aaPredicted RBP16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ARF1P84077 181 aaKnown RBP16.97■□□□□ 0.31
NPHP4-209ENST00000489180 COQ8AQ8NI60 647 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 CAPNS2Q96L46 248 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF700Q9H0M5 742 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 SMURF1Q9HCE7 757 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 LAMP5Q9UJQ1 280 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 FBXO9Q9UK97 447 aaPredicted RBP16.97■□□□□ 0.31
NPHP4-209ENST00000489180 INMT-MINDY4F8WBC2 141 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 EEF1E1O43324 174 aaKnown RBP16.97■□□□□ 0.31
NPHP4-209ENST00000489180 F8A1P23610 371 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 TRAM2Q15035 370 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 SEC23BQ15437 767 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ATG9BQ674R7 924 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF778Q96MU6 729 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 SMOXQ9NWM0 555 aa16.97■□□□□ 0.31
NPHP4-209ENST00000489180 LEFTY2O00292 366 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 TNFP01375 233 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 CHRNA1P02708 482 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 IL3P08700 152 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF267Q14586 743 aaPredicted RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 C18orf21Q32NC0 220 aaPredicted RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 SLC36A3Q495N2 470 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 PYHIN1Q6K0P9 492 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 TP53INP2Q8IXH6 220 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 RASGEF1AQ8N9B8 481 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 IMP4Q96G21 291 aaKnown RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 SH3YL1Q96HL8 342 aaPredicted RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 PSKH2Q96QS6 385 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 TDP1Q9NUW8 608 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 HTR1EP28566 365 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 SLC6A6P31641 620 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 PDX1P52945 283 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 GPR17Q13304 367 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 GALNT10Q86SR1 603 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 PIAS4Q8N2W9 510 aaPredicted RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 METTL27Q8N6F8 245 aaPredicted RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 ACOT12Q8WYK0 555 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 TSGA13Q96PP4 275 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 EPYCQ99645 322 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 NANSQ9NR45 359 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 KLRF1Q9NZS2 232 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 ZFR2Q9UPR6 939 aaKnown RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 CPED1A4D0V7 1026 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF860A6NHJ4 632 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 CSTBP04080 98 aaKnown RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 MAGEA8P43361 318 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF45Q02386 682 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 NFE2L1Q14494 772 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 LRRC37A5PQ49AS3 106 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 PSAPL1Q6NUJ1 521 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 GATAD2BQ8WXI9 593 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 TMEM175Q9BSA9 504 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 KNDC1Q76NI1 1749 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 EEDO75530 441 aaKnown RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 BCKDHAP12694 445 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 SLC9A3P48764 834 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 OR4D1Q15615 310 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 JPH3Q8WXH2 748 aaPredicted RBP16.96■□□□□ 0.31
NPHP4-209ENST00000489180 DOHHQ9BU89 302 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 PARPBPQ9NWS1 579 aa16.96■□□□□ 0.31
NPHP4-209ENST00000489180 INPPL1O15357 1258 aa16.95■□□□□ 0.3
NPHP4-209ENST00000489180 COCHO43405 550 aa16.95■□□□□ 0.3
NPHP4-209ENST00000489180 STSP08842 583 aa16.95■□□□□ 0.3
NPHP4-209ENST00000489180 STK19P49842 368 aaPredicted RBP16.95■□□□□ 0.3
NPHP4-209ENST00000489180 DECR1Q16698 335 aa16.95■□□□□ 0.3
NPHP4-209ENST00000489180 C22orf42Q6IC83 251 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms