RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 RPTNQ6XPR3 784 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 SCUBE1Q8IWY4 988 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 B3GNT7Q8NFL0 401 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 QRFPRQ96P65 431 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 GPR22Q99680 433 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 CPNE1Q99829 537 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 GPRC5BQ9NZH0 403 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 GRHL1Q9NZI5 618 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 WHRNQ9P202 907 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 ZNF223Q9UK11 482 aaPredicted RBP20.13■□□□□ 0.81
USP40-215ENST00000484528 FBXW2Q9UKT8 454 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 EML6Q6ZMW3 1958 aa20.13■□□□□ 0.81
USP40-215ENST00000484528 ZNF407Q9C0G0 2248 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 MYOCOSA0A1B0GUC4 107 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 FAM187AA6NFU0 413 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 FCHO1O14526 889 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CLGNO14967 610 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 ASNA1O43681 348 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CLEC3AO75596 197 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 ABOP16442 354 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 STMN1P16949 149 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CD22P20273 847 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 HTR1EP28566 365 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 TNFRSF8P28908 595 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 RFC3P40938 356 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 HLCSP50747 726 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CLCN2P51788 898 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CBLBQ13191 982 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 DOC2AQ14183 400 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 TRIM40Q6P9F5 258 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 BNC2Q6ZN30 1099 aaPredicted RBP20.12■□□□□ 0.81
USP40-215ENST00000484528 SPPL2CQ8IUH8 684 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 MCEMP1Q8IX19 187 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CTAGE3PQ8IX95 158 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 TCAIMQ8N3R3 496 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 SPATA4Q8NEY3 305 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 OR2L5Q8NG80 312 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 NCLNQ969V3 563 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 TMEM125Q96AQ2 219 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CSF3RQ99062 836 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 REXO4Q9GZR2 422 aaKnown RBP20.12■□□□□ 0.81
USP40-215ENST00000484528 CNOT10Q9H9A5 744 aaKnown RBP20.12■□□□□ 0.81
USP40-215ENST00000484528 ZNF835Q9Y2P0 537 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 ASB1Q9Y576 335 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 CLDN16Q9Y5I7 305 aa20.12■□□□□ 0.81
USP40-215ENST00000484528 KLF2Q9Y5W3 355 aaPredicted RBP20.12■□□□□ 0.81
USP40-215ENST00000484528 FAM159BA6NKW6 160 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 STK16O75716 305 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 FAM155BO75949 473 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 C1QAP02745 245 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 TRHRP34981 398 aaPredicted RBP20.11■□□□□ 0.81
USP40-215ENST00000484528 GP5P40197 560 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 MEOX1P50221 254 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 GPX6P59796 221 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 ATP6V0D1P61421 351 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 NAA30Q147X3 362 aaPredicted RBP20.11■□□□□ 0.81
USP40-215ENST00000484528 PDK4Q16654 411 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 SULT1C3Q6IMI6 304 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 CCDC25Q86WR0 208 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 NPLQ9BXD5 320 aaPredicted RBP20.11■□□□□ 0.81
USP40-215ENST00000484528 CAPS2Q9BXY5 557 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 NT5DC2Q9H857 520 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 TRIM45Q9H8W5 580 aaPredicted RBP20.11■□□□□ 0.81
USP40-215ENST00000484528 COPS7BQ9H9Q2 264 aaPredicted RBP20.11■□□□□ 0.81
USP40-215ENST00000484528 PRM3Q9NNZ6 103 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 ZNF490Q9ULM2 529 aaPredicted RBP20.11■□□□□ 0.81
USP40-215ENST00000484528 RNF112Q9ULX5 631 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 DNAJC13O75165 2243 aa20.11■□□□□ 0.81
USP40-215ENST00000484528 A0A088AWK7 358 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 EIF3HO15372 352 aaKnown RBP eCLIP20.1■□□□□ 0.81
USP40-215ENST00000484528 CCNT2O60583 730 aaKnown RBP20.1■□□□□ 0.81
USP40-215ENST00000484528 ITGA10O75578 1167 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 ZNF10P21506 573 aaPredicted RBP20.1■□□□□ 0.81
USP40-215ENST00000484528 GSTM2P28161 218 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 GGT5P36269 586 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 LIM2P55344 173 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 HSD17B7P56937 341 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 RAB10P61026 200 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 CDSNQ15517 529 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 ZKSCAN8Q15776 578 aaPredicted RBP20.1■□□□□ 0.81
USP40-215ENST00000484528 ADPRMQ3LIE5 342 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 ABHD17CQ6PCB6 329 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 C3P1Q6ZMU1 363 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 C16orf47Q6ZP98 133 aaPredicted RBP20.1■□□□□ 0.81
USP40-215ENST00000484528 Q6ZPB1 254 aaPredicted RBP20.1■□□□□ 0.81
USP40-215ENST00000484528 C3orf62Q6ZUJ4 267 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 MAATS1Q7Z4T9 603 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 CMC1Q7Z7K0 106 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 CYP4Z2PQ8N1L4 340 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 GHDCQ8N2G8 530 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 TMEM156Q8N614 296 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 PPM1NQ8N819 430 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 PDPRQ8NCN5 879 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 ANP32BQ92688 251 aaKnown RBP20.1■□□□□ 0.81
USP40-215ENST00000484528 PTCD3Q96EY7 689 aaKnown RBP20.1■□□□□ 0.81
USP40-215ENST00000484528 VMP1Q96GC9 406 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 F2RL3Q96RI0 385 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 SERINC2Q96SA4 455 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 EHD1Q9H4M9 534 aa20.1■□□□□ 0.81
USP40-215ENST00000484528 LIN28AQ9H9Z2 209 aaKnown RBP20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms