RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF490Q9ULM2 529 aaPredicted RBP11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HRH3Q9Y5N1 445 aa11.43□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PABPN1LA6NDY0 278 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 E9PLN8 166 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CCDC188H7C350 402 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PRKNO60260 465 aaPredicted RBP11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CLDN14O95500 239 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 EPORP19235 508 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TFEBP19484 476 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RPL21P46778 160 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CLCN2P51788 898 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SMSP52788 366 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RAB38P57729 211 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 BTN3A2P78410 334 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 HSF1Q00613 529 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 POU4F1Q01851 419 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ILF2Q12905 390 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CYP4X1Q8N118 509 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZFP62Q8NB50 900 aaPredicted RBP11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 AGAP11Q8TF27 550 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MTFMTQ96DP5 389 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MAGED4Q96JG8 741 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 UBXN10Q96LJ8 280 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 VKORC1Q9BQB6 163 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TMEM79Q9BSE2 394 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CAPS2Q9BXY5 557 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ENKD1Q9H0I2 346 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 RHBGQ9H310 441 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PRDM7Q9NQW5 492 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NSMCE4AQ9NXX6 385 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 KCMF1Q9P0J7 381 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CTNNAL1Q9UBT7 734 aa11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MTO1Q9Y2Z2 717 aaKnown RBP11.42□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 A8MUA0 341 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CXorf49A8MYA2 514 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PSMD12O00232 456 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 H2AFYO75367 372 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ITGA10O75578 1167 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PIAS1O75925 651 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MYO1DO94832 1006 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 WDR47O94967 919 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ESRRAP11474 423 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZNF24P17028 368 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CD22P20273 847 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SAT1P21673 171 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PPP2R1BP30154 601 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PTGER1P34995 402 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CASP2P42575 452 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 KCNC1P48547 511 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MEOX1P50221 254 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 LIM2P55344 173 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PCDH1Q08174 1060 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SLBPQ14493 270 aaKnown RBP eCLIP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZKSCAN8Q15776 578 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CMPK2Q5EBM0 449 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 XKR6Q5GH73 641 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ADNP2Q6IQ32 1131 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ABHD17CQ6PCB6 329 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NCCRP1Q6ZVX7 275 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GDF7Q7Z4P5 450 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MDGA2Q7Z553 956 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 UBE3DQ7Z6J8 389 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZNF595Q8IYB9 648 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ARMC2Q8NEN0 867 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 OR2L5Q8NG80 312 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 VMP1Q96GC9 406 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 LURAP1Q96LR2 239 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 EGFL8Q99944 293 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SPOCK3Q9BQ16 436 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GPAMQ9HCL2 828 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PRTFDC1Q9NRG1 225 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 VTI1BQ9UEU0 232 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PTBP2Q9UKA9 531 aaKnown RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 DAPP1Q9UN19 280 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 KLF13Q9Y2Y9 288 aaPredicted RBP11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SAR1BQ9Y6B6 198 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MED13LQ71F56 2210 aa11.41□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 A0A0G2JN53 185 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TRBV11-1A0A0K0K1C0 115 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 EFCAB8A8MWE9 144 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 KLRC4-KLRK1H3BQV0 150 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 FCHO1O14526 889 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ERI3O43414 337 aaKnown RBP11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PEX1O43933 1283 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CTNSO60931 367 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 CD1DP15813 335 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 OR4D1Q15615 310 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TBCCQ15814 346 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 ZBED8Q8IZ13 594 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 KRT78Q8N1N4 520 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TCAIMQ8N3R3 496 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SPATA6LQ8N4H0 392 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 MARVELD2Q8N4S9 558 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PDPRQ8NCN5 879 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 PTPMT1Q8WUK0 201 aaPredicted RBP11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 NCLNQ969V3 563 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TMEM125Q96AQ2 219 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 SERINC2Q96SA4 455 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 GPR22Q99680 433 aa11.4□□□□□ -0.58
MSH5-SAPCD1-205ENST00000476085 TRIM31Q9BZY9 425 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms