RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SH2B3Q9UQQ2 575 aa4.9□□□□□ -1.63
PTPN4-209ENST00000469511 KLF13Q9Y2Y9 288 aaPredicted RBP4.9□□□□□ -1.63
PTPN4-209ENST00000469511 A0A087X1B8 175 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ATP6AP2A0A1C7CYW4 349 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 CLCA1A8K7I4 914 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 FAM171A2A8MVW0 826 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ZNF487B1APH4 448 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 KLRC4-KLRK1H3BQV0 150 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 KCNAB3O43448 404 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 LCMT2O60294 686 aaKnown RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ZNF354AO60765 605 aaPredicted RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ATP6AP2O75787 350 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 KCNH1O95259 989 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 GOT2P00505 430 aaKnown RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 FTH1P02794 183 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 F7P08709 466 aaPredicted RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 OR56A5P0C7T3 313 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 BMP5P22003 454 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MSNP26038 577 aaKnown RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 AOAHP28039 575 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 CMPK1P30085 196 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 BCL6P41182 706 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MAGEA5P43359 124 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 OR4D2P58180 307 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 AP2B1P63010 937 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ITIH4Q14624 930 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MSMPQ1L6U9 139 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 SLC25A35Q3KQZ1 300 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 KRTAP24-1Q3LI83 254 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 FILIP1LQ4L180 1135 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 XKR6Q5GH73 641 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 CT47A1Q5JQC4 288 aaPredicted RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ANKRD20A2Q5SQ80 823 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 C1orf185Q5T7R7 199 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ANKRD20A1Q5TYW2 823 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ANKRD20A3Q5VUR7 823 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 FOXB2Q5VYV0 432 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 PACS1Q6VY07 963 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 TRILQ7L0X0 811 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 P3H2Q8IVL5 708 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 TMEM251Q8N6I4 163 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 HORMAD2Q8N7B1 307 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 POGLUT1Q8NBL1 392 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 SIMC1Q8NDZ2 872 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 PLPP5Q8NEB5 264 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MYRIPQ8NFW9 859 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 OR2M7Q8NG81 312 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 PPP1R14CQ8TAE6 165 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 HMGCLL1Q8TB92 370 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 SLC35G2Q8TBE7 412 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ZCCHC10Q8TBK6 192 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 UBE2FQ969M7 185 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 RAD51AP1Q96B01 352 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 FAM136AQ96C01 138 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MISP3Q96FF7 219 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 PERPQ96FX8 193 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 QKIQ96PU8 341 aaKnown RBP eCLIP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 LPAR4Q99677 370 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 TBL1YQ9BQ87 522 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 PIGQQ9BRB3 760 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 HEMGNQ9BXL5 484 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 TTTY12Q9BZ98 90 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ZDHHC11Q9H8X9 412 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 ARNT2Q9HBZ2 717 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MRPS30Q9NP92 439 aaKnown RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MARCH4Q9P2E8 410 aaPredicted RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 GALPQ9UBC7 116 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 TAC3Q9UHF0 121 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 DRG1Q9Y295 367 aaKnown RBP4.89□□□□□ -1.63
PTPN4-209ENST00000469511 WIF1Q9Y5W5 379 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 DUSP10Q9Y6W6 482 aa4.89□□□□□ -1.63
PTPN4-209ENST00000469511 MALRD1Q5VYJ5 2156 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 hCG_1818297A0A087WSY0 165 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 TRBV23-1A0A0A0MS06 115 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 MYOCOSA0A1B0GUC4 107 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 CTAGE15A4D2H0 777 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 TUBAL3A6NHL2 446 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 H3BS24 57 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 H7BY64 318 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 PRPF4O43172 522 aaKnown RBP eCLIP4.88□□□□□ -1.63
PTPN4-209ENST00000469511 ARHGEF9O43307 516 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 B4GALT2O60909 372 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 ITGA10O75578 1167 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 ANXA9O76027 345 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 GLSO94925 669 aaPredicted RBP4.88□□□□□ -1.63
PTPN4-209ENST00000469511 OR6B1O95007 311 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 ZNF205O95201 554 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 FKBP9O95302 570 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 NSA2O95478 260 aaKnown RBP4.88□□□□□ -1.63
PTPN4-209ENST00000469511 METTL18O95568 372 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 TGFB1P01137 390 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 GSTM1P09488 218 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 RFPL3SP0C7P2 107 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 ERGP11308 486 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 ZFXP17010 805 aaPredicted RBP4.88□□□□□ -1.63
PTPN4-209ENST00000469511 MAOAP21397 527 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 PSMA3P25788 255 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 PPP2R1BP30154 601 aa4.88□□□□□ -1.63
PTPN4-209ENST00000469511 COILP38432 576 aaPredicted RBP4.88□□□□□ -1.63
PTPN4-209ENST00000469511 TNNT3P45378 269 aaPredicted RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms